Plant FIBer expression Database

Potri.006G244800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25580 297 / 4e-96 unknown protein
AT1G18950 284 / 2e-87 DDT domain superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.018G035700
[exp]
719 / 0 AT5G25580 308 / 3e-100 unknown protein
Potri.012G072200
[exp]
289 / 1e-89 AT1G18950 691 / 0.0 DDT domain superfamily (.1)
Potri.015G067300
[exp]
275 / 8e-84 AT1G18950 665 / 0.0 DDT domain superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042167
[exp]
291 / 6e-90 AT1G18950 697 / 0.0 DDT domain superfamily (.1)
Lus10004259
[exp]
291 / 9e-90 AT1G18950 695 / 0.0 DDT domain superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02791 DDT DDT domain
Representative CDS sequence
>Potri.006G244800.2 pacid=42766876 polypeptide=Potri.006G244800.2.p locus=Potri.006G244800 ID=Potri.006G244800.2.v4.1 annot-version=v4.1
ATGACAGACGACGAGAAGGAAAAAGGCGTCGTCGTTTTGGACGACGACTCTTATTTGAAATCGGAAATCGAGAAGATTCGTGGACGATGGGAACTCGCTA
CGGTTCTTAATTTTTTGAGCGTTTTTGAGCCAGTCATTGGGGTTGATTTAAAGTTAACGGCAGAGGAGATTGAGAGTGCTCTTGTTGAGCCTAATAAATC
ACTTGCTCAGCTTCACATTAAGCTATTAAAGGGGATACCGCCTATGAGTAAAACATTGAATGCATCTGATGCGTGGGTGAGCGAGCTTTGTAAGAAACTA
GCCATGTGGTGGCCACGGGTTGCTGAAGGCGAGTTACCACTGAAGGCAGCCAAAGGAGATGAGATGTCTAGATACAAGGAACTAGATCCAGCTAATAGAT
TGCTGATTTTGAAAGCACTCTGTGAACTCAGAGCTAAACAAAATGACATTGCATCTTATGTTAACGATTCTTTGAAAGATGGAACTGAAATTTCTTATTT
CCGGAAAGATAAGATTGGGGTAGATGGAACTGCAACTTCTTACTGGTATGATGGAAGTTCTGTCATTGGCCATAGATTGTACAAGCAAGTAAACAAGACT
GGGGCAAATAGTAGAATGAGGGGTAAAGCATCAAAAAATCAGCCAGCTACCTGTTTCCAATGGGAAATACTTGCAACCAATCTTGAGGAATTTCAGAAAG
TTGTGAATGAACTCTCTTCTAGCAAAGTTACTGCACAAGTTGCAGCTGGCAAGACCATTGAAACTGATGTCCTGCCTATTATACAGAAATTTCAGAAGAA
GAAAGATAGGGCCCTCAAACAAAAAGAAAGGCAAGAAAAGCTCCTGAACAGTTTTAGACCCTGCACTGCTGGGGTTACTCGTTCCTGCCGCAGTCGCAGA
CCTATCAGTTATACATTTGATGACTATGATCGTGCTATTGATGAGGCTATAAAAATAACAAAGAAAAGGAAAACAATTGAAGAGCAGAGCAACAATGGCA
AACATGTTAAGCAGGAAAAAAATACTTCTAATGGGGGTTCAAATATGGGCACAAATTCAGAAGAAAGTCATGGTGAAATAGGTGATTCAGGCATGAGTGC
AGACTCCAAAGATAATATCGAGAAGGGAAGCTCCTCAGAGAGTGAAAATGAAAGTGACAAGCTTCATGAAGCGGATGATGATGATGATGATGATTATGAT
AGCAAAAGGGATCATGATAATGGGAGTGGATCCAACAAATCTGACAAAGAAAATGAAAATTTTGGTGACAAGAACATTGCTCGGAAGTTTGGTTCTCGTT
GGAGTTCAAGACTGGCTGGAGTTGCAAGCCATCCTGCCCTGGAAGCTGGAAACTTGTGTAAAAAGAGTAGGTTGAGACAAAGACCCACTCGTAACTCTGC
CCTTGACTCTAATAATGTGCTTGATTCAGATGATGAAACTTTGTCAAAACATACAAACAGAGAGATATCTGGACATGAAGACTCGCCTCCAGTTTCTAAT
TCAGATGTGGTCTGTTGTGACAGTTAA
AA sequence
>Potri.006G244800.2 pacid=42766876 polypeptide=Potri.006G244800.2.p locus=Potri.006G244800 ID=Potri.006G244800.2.v4.1 annot-version=v4.1
MTDDEKEKGVVVLDDDSYLKSEIEKIRGRWELATVLNFLSVFEPVIGVDLKLTAEEIESALVEPNKSLAQLHIKLLKGIPPMSKTLNASDAWVSELCKKL
AMWWPRVAEGELPLKAAKGDEMSRYKELDPANRLLILKALCELRAKQNDIASYVNDSLKDGTEISYFRKDKIGVDGTATSYWYDGSSVIGHRLYKQVNKT
GANSRMRGKASKNQPATCFQWEILATNLEEFQKVVNELSSSKVTAQVAAGKTIETDVLPIIQKFQKKKDRALKQKERQEKLLNSFRPCTAGVTRSCRSRR
PISYTFDDYDRAIDEAIKITKKRKTIEEQSNNGKHVKQEKNTSNGGSNMGTNSEESHGEIGDSGMSADSKDNIEKGSSSESENESDKLHEADDDDDDDYD
SKRDHDNGSGSNKSDKENENFGDKNIARKFGSRWSSRLAGVASHPALEAGNLCKKSRLRQRPTRNSALDSNNVLDSDDETLSKHTNREISGHEDSPPVSN
SDVVCCDS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25580 unknown protein Potri.006G244800
[exp]
0 1
AT5G61840 GUT1, IRX10-L Exostosin family protein (.1) Potri.015G116700
[exp]
16.97 0.6397
AT1G18440 Peptidyl-tRNA hydrolase family... Potri.012G061100
[exp]
21.44 0.6840
AT5G13610 Protein of unknown function (D... Potri.008G045200
[exp]
41.27 0.6635
AT1G27070 5'-AMP-activated protein kinas... Potri.008G194300
[exp]
45.29 0.6567
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.013G106100
[exp]
47.11 0.6012
AT5G20220 zinc knuckle (CCHC-type) famil... Potri.010G092600
[exp]
69.58 0.6521
AT2G46090 Diacylglycerol kinase family p... Potri.002G162900
[exp]
69.74 0.6288

Potri.006G244800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.