Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ATKC1.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32650 752 / 0 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT5G46240 513 / 3e-175 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT2G26650 507 / 3e-170 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G18290 478 / 6e-161 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT2G25600 477 / 3e-158 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT4G32500 476 / 4e-158 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT4G22200 449 / 2e-148 AKT3, AKT2/3 potassium transport 2/3 (.1) AT3G02850 301 / 9e-92 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 294 / 5e-89 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT1G01340 76 / 5e-14 ACBK1, ATCNGC10 cyclic nucleotide gated channel 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G124944 [exp] 1179 / 0 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 1046 / 0 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G071400 [exp] 520 / 4e-175 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.004G132200 [exp] 508 / 6e-172 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G249900 [exp] 510 / 5e-171 AT2G25600 1065 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G031600 [exp] 506 / 3e-169 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.003G018800 [exp] 450 / 2e-148 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.017G135400 [exp] 295 / 2e-89 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.004G083300 [exp] 290 / 2e-87 AT3G02850 1268 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007670 [exp] 843 / 0 AT4G32650 724 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10037904 [exp] 837 / 0 AT4G32650 706 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Lus10043298 [exp] 504 / 1e-168 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019442 [exp] 501 / 8e-168 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 501 / 2e-167 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10028128 [exp] 495 / 5e-167 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10042831 [exp] 491 / 2e-165 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10002529 [exp] 479 / 3e-159 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 460 / 2e-157 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10015474 [exp] 468 / 6e-155 AT4G22200 1093 / 0.0 potassium transport 2/3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel
Representative CDS sequence Show only first row Show all	>Potri.006G245000.1 pacid=42768143 polypeptide=Potri.006G245000.1.p locus=Potri.006G245000 ID=Potri.006G245000.1.v4.1 annot-version=v4.1 ATGGATGAAGCAAGGTCACCGTTGTCATTACTGTTTCGAAGACGGTCGGGTGGAGATGTCACAAAGAATTTAGCCTCAGTTTCAAGCAGCCTTTTACCAG CTTTTGGAATTGATGTTGATGATGGTTACTTGCACCTGAAGAAATATGTTATTGCTCCTTATGATAGAAGATACCGGTGGTGGCAAACGTTCCTTGTGGT GTTGGTGGTGTACTCAGCATGGGCATCTCCTTTTGAGCTTGCATTTAAGAAAGCGGCTACCGGAGGATTTCTGCCCGTCGATTTGGTGGTTGATGCCTTC TTTGCCGCCGATATAGTCCTAACTTTCTTTGTTGCTTATTTGGACAATACAACCTATCTTCTTGTGGATGATCACAAGAAAATTGCTCTACGGTATATCA CTAGGTTATTGTTCCCCATGGACGTAGCCTCGACCCTGCCATTCCACATCATACACAGAATCTTGACTGGCAAAATGCACGGAGAGGTCTTCGGTTTTCT CAATCTTCTTCGGCTTTGGCGACTCAAGCGTGTCGGTGAACTCTTCAAAAGGCTGGAGAAAGACACACGCTTCAGCTACTTCTGGACAAGATTATTTAAA CTAATCAGTGTTACACTATTTGTGGTTCACTCGGCAGGATGTATCTACTACTGGATTGCTGTCCATCATGACACAGAAGGTAATACTTGGATTGGAAAGC ACGTTGAAGATTTCGAACAAAGAAGCATCTGGTTGGGCTACACGTATTCCATTTATTGGTCCATTGTTACCCTAACCACTGTCGGCTACGGAGACTTGCA TGCAGAAAACACGGGAGAGAAGGTTTTTAACATGTTTTACATGCTATTCAACATTGGCCTCACCGCTTATATAATCGGAAACATGACGAACCTTGTTGTC CGTTCCGCAGCTCATACTTTTGCTATGAGGAATGCCATCGATCAGATATTAAGATATGCAAGCAAGAATAGACTCCCAGAAGGATTGAGAAAGCAAATGC TAGCACACTTGCAACTCAAGTTCAAGACAGCAGAGTTGCAGCAAGAGGAGGTGTTGGAGAACTTACCAAAAGCAATCAGATCTAGCATTGCTCAACATCT TTTCCATAGCATCGTTGCAAAAACCTACCTTTTCAAAGGAGTATCTGAAGACCTTATTACCCAGTTGGTATCAGAAATGAAAGCAGAATATTTTCCTCCT AAGGTTGAAATTATTTTACAAAACGAGATTCCGACAGAGTTTTACGTCTTAGTAACTGGAGCAGTGGACGTGCTGGTGTACAGGAATGGAACAGAGCAGG TTTTGTCAAAACTAGTATCTTCAGACATGGCAGGGGAAATTGGGGTTGTATTCAACATCCCACAGCCTTTTACAGTGAGGACCAGGAGACTTTCCCAGGT CATCCGGCTCAGTCATCATCATCTCAAGCAAATGGCGCAGCCCCATAGCGAAGATGGAAAAAAAATTATCTCCAACTTCATCCAGTACCTAAAGGATTTG AAACGAGAGATGCAAGAAGAAATACCCTTTCTCAGGGAATTGCTGGAAGACACAGCTGTGGAGAAAGCAACATCAAATGAGGGGTTACGAAGTTCTGAGG CACTAAATTCTCAAAGAGAAACAAGTGTAGAAGGAATACAAGAAAATTCTACTCCACTGCCAAGCACATTTCCCAAAAGAGTGATAATCCATGGGCATCA TCCAAACGAAACAACAGGAGATACAATGGGGAAACTCATACATTTGCCTGACTCAACAGAAAATCTATTCGACATGGCAGAAACGAAGTTTGGCAAGCAT GGAAAGAAAATTCTTATGGAGGATGGCTCAGAAGTAGAAGAATTGGATGCTTTAAGGGAGAATGATCACTTGTTTATTTTTTAA
AA sequence Show only first row Show all	>Potri.006G245000.1 pacid=42768143 polypeptide=Potri.006G245000.1.p locus=Potri.006G245000 ID=Potri.006G245000.1.v4.1 annot-version=v4.1 MDEARSPLSLLFRRRSGGDVTKNLASVSSSLLPAFGIDVDDGYLHLKKYVIAPYDRRYRWWQTFLVVLVVYSAWASPFELAFKKAATGGFLPVDLVVDAF FAADIVLTFFVAYLDNTTYLLVDDHKKIALRYITRLLFPMDVASTLPFHIIHRILTGKMHGEVFGFLNLLRLWRLKRVGELFKRLEKDTRFSYFWTRLFK LISVTLFVVHSAGCIYYWIAVHHDTEGNTWIGKHVEDFEQRSIWLGYTYSIYWSIVTLTTVGYGDLHAENTGEKVFNMFYMLFNIGLTAYIIGNMTNLVV RSAAHTFAMRNAIDQILRYASKNRLPEGLRKQMLAHLQLKFKTAELQQEEVLENLPKAIRSSIAQHLFHSIVAKTYLFKGVSEDLITQLVSEMKAEYFPP KVEIILQNEIPTEFYVLVTGAVDVLVYRNGTEQVLSKLVSSDMAGEIGVVFNIPQPFTVRTRRLSQVIRLSHHHLKQMAQPHSEDGKKIISNFIQYLKDL KREMQEEIPFLRELLEDTAVEKATSNEGLRSSEALNSQRETSVEGIQENSTPLPSTFPKRVIIHGHHPNETTGDTMGKLIHLPDSTENLFDMAETKFGKH GKKILMEDGSEVEELDALRENDHLFIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.006G245000 [exp]	0	1	Pt-ATKC1.4
AT4G32650		AtLKT1, KAT3, A...	A. thaliana low-K+-tolerant 1,...		Potri.012G124944 [exp]	3.16	0.7041
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	10.14	0.7711
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	11.48	0.7382	ATSEB1.1
AT1G45688			unknown protein		Potri.002G124600 [exp]	18.43	0.7315
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.014G035100 [exp]	19.62	0.7246
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	23.23	0.7106	Pt-XTH3.1
AT3G24630			unknown protein		Potri.018G082300 [exp]	24.49	0.7429
AT4G35070			SBP (S-ribonuclease binding pr...		Potri.004G175500 [exp]	26.98	0.6795
AT5G20950			Glycosyl hydrolase family prot...		Potri.013G055600 [exp]	27.83	0.6407
					Potri.002G021150 [exp]	28.63	0.6549

Compare expression of checked genes

Potri.006G245000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.