Plant FIBer expression Database

Potri.006G245100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25570 68 / 3e-16 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G125000
[exp]
126 / 2e-39 AT5G25570 67 / 1e-15 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007669
[exp]
63 / 3e-14 AT5G25570 76 / 8e-19 unknown protein
Lus10012419
[exp]
54 / 5e-11 AT5G25570 62 / 9e-15 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G245100.1 pacid=42767512 polypeptide=Potri.006G245100.1.p locus=Potri.006G245100 ID=Potri.006G245100.1.v4.1 annot-version=v4.1
ATGGCGACTACCGCACCAAGCGAGCTCGATCCAAACCTTCTTCTTCCTGCTGCTCCATCAGAATCCGAATCCGAATCTCTGCTCTCTTCTCTCGTTTACG
ATACGTCACAGCAGTTTCAGATGGCAATGGGCAACATGCTTAAGATGATAACTGAAATTGATCAAACCACGGGTGGGATAATGGAAGAGATAGGGAAATG
CAAAGATACAGCTTTTGAGAGGAAGAAAGACTTGGAGGAAGAGAAGGAAAGGTTTCAGAAAGCTGCTTATGCTGTGCTAGGCATGCTCAATGACACATAA
AA sequence
>Potri.006G245100.1 pacid=42767512 polypeptide=Potri.006G245100.1.p locus=Potri.006G245100 ID=Potri.006G245100.1.v4.1 annot-version=v4.1
MATTAPSELDPNLLLPAAPSESESESLLSSLVYDTSQQFQMAMGNMLKMITEIDQTTGGIMEEIGKCKDTAFERKKDLEEEKERFQKAAYAVLGMLNDT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25570 unknown protein Potri.006G245100
[exp]
0 1
AT1G78960 ATLUP2 lupeol synthase 2 (.1) Potri.009G064950
[exp]
10.95 0.8305
AT1G05610 APS2 ADP-glucose pyrophosphorylase ... Potri.007G146100
[exp]
12.80 0.8452
AT5G45480 Protein of unknown function (D... Potri.015G113700
[exp]
12.84 0.8403
AT5G43240 Protein of unknown function (D... Potri.001G247300
[exp]
15.19 0.8460
AT5G45470 Protein of unknown function (D... Potri.015G113400
[exp]
16.24 0.8265
AT3G55140 Pectin lyase-like superfamily ... Potri.008G048600
[exp]
19.18 0.7900
Potri.001G388801
[exp]
19.44 0.8024
AT5G27450 MVK, MK mevalonate kinase (.1.2.3) Potri.013G024000
[exp]
20.78 0.7149
Potri.010G190900
[exp]
22.13 0.8292
AT5G02440 unknown protein Potri.006G084400
[exp]
27.82 0.7516

Potri.006G245100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.