Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11460 144 / 2e-39 Protein of unknown function (DUF581) (.1) AT2G25690 142 / 9e-39 Protein of unknown function (DUF581) (.1), Protein of unknown function (DUF581) (.2) AT3G63210 97 / 9e-23 MARD1 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) AT3G22550 94 / 8e-22 Protein of unknown function (DUF581) (.1) AT1G79970 71 / 7e-14 unknown protein AT1G74940 68 / 8e-13 Protein of unknown function (DUF581) (.1) AT5G20700 68 / 9e-13 Protein of unknown function (DUF581) (.1) AT1G22160 61 / 5e-11 Protein of unknown function (DUF581) (.1) AT5G49120 58 / 4e-10 Protein of unknown function (DUF581) (.1) AT1G53885 57 / 9e-10 Protein of unknown function (DUF581) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035400 [exp] 573 / 0 AT5G11460 144 / 1e-39 Protein of unknown function (DUF581) (.1) Potri.001G179700 [exp] 259 / 3e-83 AT5G11460 141 / 1e-38 Protein of unknown function (DUF581) (.1) Potri.005G211500 [exp] 119 / 1e-30 AT3G22550 182 / 4e-56 Protein of unknown function (DUF581) (.1) Potri.010G085700 [exp] 116 / 4e-29 AT3G22550 216 / 8e-69 Protein of unknown function (DUF581) (.1) Potri.002G050800 [exp] 114 / 7e-29 AT3G22550 174 / 3e-53 Protein of unknown function (DUF581) (.1) Potri.008G154600 [exp] 110 / 3e-27 AT3G22550 219 / 2e-70 Protein of unknown function (DUF581) (.1) Potri.006G139200 [exp] 81 / 4e-17 AT5G20700 139 / 2e-40 Protein of unknown function (DUF581) (.1) Potri.008G219800 [exp] 65 / 2e-12 AT5G49120 104 / 4e-29 Protein of unknown function (DUF581) (.1) Potri.010G011700 [exp] 64 / 2e-12 AT5G49120 97 / 2e-26 Protein of unknown function (DUF581) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012417 [exp] 310 / 1e-102 AT3G22550 140 / 4e-38 Protein of unknown function (DUF581) (.1) Lus10006102 [exp] 117 / 9e-30 AT3G22550 193 / 1e-60 Protein of unknown function (DUF581) (.1) Lus10010568 [exp] 114 / 1e-28 AT3G22550 187 / 2e-58 Protein of unknown function (DUF581) (.1) Lus10022060 [exp] 105 / 1e-25 AT3G63210 133 / 1e-37 MEDIATOR OF ABA-REGULATED DORMANCY 1, Protein of unknown function (DUF581) (.1) Lus10042606 [exp] 103 / 7e-25 AT3G22550 139 / 1e-39 Protein of unknown function (DUF581) (.1) Lus10007668 [exp] 84 / 1e-19 AT3G22550 43 / 6e-06 Protein of unknown function (DUF581) (.1) Lus10025770 [exp] 83 / 9e-18 AT3G22550 100 / 2e-24 Protein of unknown function (DUF581) (.1) Lus10035894 [exp] 72 / 7e-14 AT3G22550 98 / 1e-23 Protein of unknown function (DUF581) (.1) Lus10027595 [exp] 58 / 2e-09 AT5G20700 76 / 1e-16 Protein of unknown function (DUF581) (.1) Lus10022948 [exp] 57 / 4e-09 AT5G20700 80 / 5e-18 Protein of unknown function (DUF581) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF04570 [poplar] [flax] zf-FLZ zinc-finger of the FCS-type, C2-C2
Representative CDS sequence Show only first row Show all	>Potri.006G245200.5 pacid=42767942 polypeptide=Potri.006G245200.5.p locus=Potri.006G245200 ID=Potri.006G245200.5.v4.1 annot-version=v4.1 ATGTTGAGGAAGAGAACCAGGTCGCTCCAGAAAGATCAACAAATGGGTCAGTTGACAATGTCTGATTCTGGTTCCGAGTCACATTTCCAGTCTGATAACA TGGGGCACAATCACAAAGCTAACTCCTTTTTCACTGTCCCTGGCCTGTTTGTTGGGTCAAGTCTTAAGGGTTTATCAGATTGTGATTCTGTTAGGAGTCC AACATCTCCTCTAGATTTTAGGATGTTTTCGAATATAGGAAATCCCAGTAAGTCCCCCAGGTCATCTCATGGCGGGCAACGGAAGAGCTGGGATTGTAAT AAAGTAGGTTTAAGCATTGTAGATTCACTTGATGATGATGGGAAAGGATCCGGCAAGGTCCTCCGATCATCGGAGAGTAAGAACATTCTTTTTGGACCCC GAGTACGAAGTAAAACCCCTAACTTTCAATCCCGTACTGATTCTTTTCAAGCACCGAAGTCTTTGCCAAGAAATTTTGCAATTTTCCCTCGTACCCTTAC CAAATCTCCCCTTCTAAAGGGCAGCTCTGATGTTCTTTTTGAAATAGGAGAAGATCCATCAGATTCAGAGCCCTTTGGAAAGATCCGGTCATGTTCATTG GACTCTTGCAGGTCATTTTCATCCCTGTCTCGGTTGGCTGGCCAGAACTCGAAAGCAAGTTCTGGGAATTTTTGCTTGGATAACGTAACTACCCGAGGCG AATGTCCTCAATTATTTGGAGGAAGCCCAAATTCAAACAACTTTTCAAACACAAATTTGACTTTTACCCCAATGTCGGTTAGCTCTGGCAACGGATTCAT CGGTTCTCTCTCTGCAAGTGAGATTGAGCTTTCTGAGGATTATACATGTGTGATTTCACATGGTCCCAACCCCAAAACAACTCATATTTACGGTGACTGC ATTTTGGAATGTCAATCTAATGACTTGAGTAATTTTGGCAAGAACGAAGCAAAGGAGATTGGATTGCCCCAGGCTGTTACTTGCTCAAAAATCCCAGGTT CATTTCCCTCTGAAGTTTTCTTGAGCTTCTGTTACTATTGCAACAAGAAATTGGATGAGGGAAAAGATATTTACATATACAGAGGCGAGAAAGCATTCTG CAGTTTGAGTTGCCGTTCAGAGGAGATCATGATTGATGAAGAGTTGGAGAATACCACCCATAAATCTTCCGAGTGTGTTCCCATGTCAGGCGAAGGGGAG GGGCTTTTCGAAACTGGCATCATTGATGCTCCATGA
AA sequence Show only first row Show all	>Potri.006G245200.5 pacid=42767942 polypeptide=Potri.006G245200.5.p locus=Potri.006G245200 ID=Potri.006G245200.5.v4.1 annot-version=v4.1 MLRKRTRSLQKDQQMGQLTMSDSGSESHFQSDNMGHNHKANSFFTVPGLFVGSSLKGLSDCDSVRSPTSPLDFRMFSNIGNPSKSPRSSHGGQRKSWDCN KVGLSIVDSLDDDGKGSGKVLRSSESKNILFGPRVRSKTPNFQSRTDSFQAPKSLPRNFAIFPRTLTKSPLLKGSSDVLFEIGEDPSDSEPFGKIRSCSL DSCRSFSSLSRLAGQNSKASSGNFCLDNVTTRGECPQLFGGSPNSNNFSNTNLTFTPMSVSSGNGFIGSLSASEIELSEDYTCVISHGPNPKTTHIYGDC ILECQSNDLSNFGKNEAKEIGLPQAVTCSKIPGSFPSEVFLSFCYYCNKKLDEGKDIYIYRGEKAFCSLSCRSEEIMIDEELENTTHKSSECVPMSGEGE GLFETGIIDAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11460			Protein of unknown function (D...		Potri.006G245200 [exp]	0	1
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Potri.013G156900 [exp]	8.18	0.8489
AT3G53850			Uncharacterised protein family...		Potri.010G198700 [exp]	9.79	0.8124
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	16.24	0.8241
AT2G18030			Peptide methionine sulfoxide r...		Potri.007G012900 [exp]	18.00	0.8094	PtrcMsrA5
AT5G57460			unknown protein		Potri.006G168200 [exp]	18.16	0.7807
AT3G26935			DHHC-type zinc finger family p...		Potri.001G325400 [exp]	18.89	0.7738
AT5G05760		ATSYP31, ATSED5...	T-SNARE SED 5, syntaxin of pla...		Potri.010G191100 [exp]	19.59	0.7793	Pt-SYP31.1
AT4G34490		ATCAP1	cyclase associated protein 1 (...		Potri.004G153900 [exp]	21.33	0.7908	CAP1.1
AT1G80230			Rubredoxin-like superfamily pr...		Potri.001G173800 [exp]	28.98	0.7429
AT1G77110		PIN6	PIN-FORMED 6, Auxin efflux car...		Potri.005G187500 [exp]	36.23	0.7782	PIN4,Pt-PIN6.2

Compare expression of checked genes

Potri.006G245200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.