Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22690 570 / 0 unknown protein AT2G29760 518 / 6e-173 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 512 / 7e-169 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G08070 495 / 4e-164 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G16860 498 / 1e-163 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 494 / 3e-163 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33990 480 / 2e-157 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G57430 481 / 1e-156 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G12770 462 / 7e-152 MEF22 mitochondrial editing factor 22 (.1) AT1G11290 457 / 2e-148 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G083700 [exp] 612 / 0 AT3G22690 1050 / 0.0 unknown protein Potri.009G044700 [exp] 548 / 0 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G044700 [exp] 542 / 0 AT3G22690 582 / 0.0 unknown protein Potri.003G031600 [exp] 531 / 6e-178 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G011000 [exp] 513 / 3e-170 AT1G08070 572 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G085500 [exp] 505 / 3e-167 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 501 / 4e-165 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G071800 [exp] 495 / 2e-164 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 498 / 6e-164 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018223 [exp] 525 / 9e-176 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 522 / 2e-174 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 513 / 5e-170 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 497 / 5e-164 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10033026 [exp] 493 / 4e-163 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 480 / 3e-157 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015225 [exp] 477 / 4e-155 AT4G18750 990 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004081 [exp] 478 / 7e-155 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014707 [exp] 473 / 8e-153 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024876 [exp] 468 / 3e-152 AT3G12770 886 / 0.0 mitochondrial editing factor 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G245300.1 pacid=42770135 polypeptide=Potri.006G245300.1.p locus=Potri.006G245300 ID=Potri.006G245300.1.v4.1 annot-version=v4.1 ATGGCCACGCTAACTCTTCCTAATATCTTCTTCTCATCTCTCTCTCCCTCTATACACAAGCCACCAACGCTAAATCCCAAAACATCCCACTCAGTTTTAA GACCACATTGGATCATAGACTTGTTAAAATCTTGTTCAAATATTAGAGAATTTTCACCAATTCATGCCCATTTGATCACCGCAAATCTCATCCATGACCC TGAAATAACGAGTCAAGTTCTTGCCTTTTTACTCTCTGTCAATAATCTTGATTGTGCGCATCAGATTTTAAGCTATTCCCATGAACCAGAATCCATAATT TGGAATACCCTTTTGGAAAACAAGCTTAAAGAAGGTTGTCCACAAGAAGTTTTGGAGTGTTATTATCACATGGTAACTCAAGGTGTGTTGTTAGATATTT CCACTTTTCACTTCTTGATTCATGCTTGTTGTAAGAATTTCGATGTTAAATTGGGAAGTGAAGTTCATGGGAGAATTTTGAAATGTGGGTTTGGAAGAAA TAAGTCTTTGAACAACAATTTGATGGGTTTGTACTCAAAGTGTGGGAAATTGAAGGAAGTATGCCAGCTGTTTGAGAAAATGACCCACAGAGATGTTATT AGTTGGAATACCATGATTTCTTGTTATGTTTTGAAGGGAATGTATAGGGAAGCGTTGGATTTATTTGATGAAATGTTGGTTAGTGGGGTTTTACCAGATG AGATAACAATGGTTAGCTTGGTTTCAACATGTGCTAAATTGAAGGATTTGGAAATGGGAAAAAGATTGCATCTTTACATTGTTGATAATAAGCTATGGAT TAGAGGGAGTTTGCTGAATTGTTTAGTAGACATGTATTCTAAGTGTGGGAAAATGGACGAAGCGCATGGTCTTTTGAGTAGATGTGATGAATCCGAGGTT GATGTTGTTCTGTGGACTACTTTGGTTAGTGGGTATGTGAAGTCTAATAAGATAGATAAGGCTAGGCAACTGTTTGACAAGATGAATGAGAGAAGCTTGG TATCGTGGACCACGATGATGTCTGGTTATGTTCAAGGTGGGTATTATTGTGAAAGTTTAGAGTTGTTTCAACAAATGAGGTTTGAAAATGTGATCCCGGA TGAGGTTGCTCTTGTGACAGTACTTTCAGCCTGTGTTCATTTAGAAGACTTTGATTTAGGAAGATCTGTCCATGCCTTTATCGTGACATATGGAATGCTT GTGGATGGGTTTCTTGGGAATGCCCTGTTGGACTTGTATGCAAAATGTGGGAAACTTGATGAAGCTCTCAGAACATTTGAGCAGTTACCTTGTAAAAGTG CAGCATCATGGAATTCAATGTTGGATGGCTTTTGCCGAAGTGGAGGTGTTGATAAGGCAAGAGACTTCTTCAATAAGATTCCAGAGAAGGATATAGTTTC TTGGAACACTATGGTCAATGCTTATGTAAAACATGATCTGTTTAATGAATCATTTGAGATTTTCTGCAAGATGCAGAGTTCAAATGTAAAACCTGACAAG ACAACTTTGATCAGTTTGCTTTCATCCTGTGCTAAAGTTGGAGCCCTGAATCATGGCATCTGGGTTAATGTGTACATAGAGAAGAATGAAATTGGTATAG ATGCTATGTTGGGAACTGCCTTGATTGACATGTATGGGAAATGTGGGTGTGTTGAAATGGCCTATGAGATCTTTACTCAAATAATTGAGAAGAACGTATT TGTTTGGACTGCAATGATGGCAGCATATGCCATGGAGGGGCAAGCCCTGGAAGCAATAGATCTATACTTGGAAATGGAGGAAAGAGGAGTAAAACCAGAT CATGTCACTTTCATAGCTCTTCTAGCTGCTTGTAGCCATGGAGGTTTAGTTGATGAAGGCTACAAATATTTCAACAAATTGAGAAGTTTCTATAATATCA TTCCAACGATTCATCATTATGGCTGTATGGTTGATCTCCTGGGTCGAGTTGGACACTTGGAAGAAACAGTCAAGTTCATTGAAAGAATGCCAATAGAACC AGATGTCTCTATATGGAGTTCCTTAATGAGAGCATGCAGAAGTCACCACAATGTGGAATTAGCAGAGCAGGCATTTAAACAGCTCATAGAGATAGACCCT ACAAATAATGGTGCTCATGTACTTCTTTCGAATATATATGCAGATGCGGGCAGATGGGATGATGTGAGCAAGGTGAGAACAAAGCTACATGAGACGGGAG TACCGAAGCAACCAGGTTTCACTATGATAGAACAAAATGGAGTTGTTCATGAATTTGTCGCCTCAAACCTTGTATCTGCAGACATTCTCTGCATGTTACA AGACATAGAGAGAAGATTACTCGTGAAACAGGAACTATCAGATACCACATCTCAACATAGCGAAAGATTGGCCGTCGCATTTGGTCTTATAAACAACCAA GAAAACTCTCCAATCCGGGTTGTGAATAGTGTTCGAATGTGTAGAGATTGTCACTCAGTTATGAAACTCATATCCCAGGCCTATGATAGAGAAATAGTTA TTAGGGATAATTATAGATTTCATAGATTCACGGATGGACATTGCTCCTGTAAAGATTACTGGTGA
AA sequence Show only first row Show all	>Potri.006G245300.1 pacid=42770135 polypeptide=Potri.006G245300.1.p locus=Potri.006G245300 ID=Potri.006G245300.1.v4.1 annot-version=v4.1 MATLTLPNIFFSSLSPSIHKPPTLNPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLITANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESII WNTLLENKLKEGCPQEVLECYYHMVTQGVLLDISTFHFLIHACCKNFDVKLGSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVI SWNTMISCYVLKGMYREALDLFDEMLVSGVLPDEITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSRCDESEV DVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSVHAFIVTYGML VDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDK TTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPD HVTFIALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDP TNNGAHVLLSNIYADAGRWDDVSKVRTKLHETGVPKQPGFTMIEQNGVVHEFVASNLVSADILCMLQDIERRLLVKQELSDTTSQHSERLAVAFGLINNQ ENSPIRVVNSVRMCRDCHSVMKLISQAYDREIVIRDNYRFHRFTDGHCSCKDYW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22690			unknown protein		Potri.006G245300 [exp]	0	1
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	1.00	0.9680
AT5G08305			Pentatricopeptide repeat (PPR)...		Potri.007G073100 [exp]	3.74	0.9389
AT5G39980			Tetratricopeptide repeat (TPR)...		Potri.017G075700 [exp]	6.32	0.9514
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	7.34	0.9488
AT1G03560			Pentatricopeptide repeat (PPR-...		Potri.019G103400 [exp]	7.81	0.8967
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	8.36	0.9366
AT5G61370			Pentatricopeptide repeat (PPR)...		Potri.012G068400 [exp]	8.48	0.9395
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	9.21	0.9422
AT2G01860		EMB975	EMBRYO DEFECTIVE 975, Tetratri...		Potri.005G252300 [exp]	9.38	0.9428
AT4G35130			Tetratricopeptide repeat (TPR)...		Potri.004G178200 [exp]	12.36	0.9371

Compare expression of checked genes

Potri.006G245300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.