Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25560 477 / 2e-171 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1.2.3.4) AT5G22920 387 / 2e-136 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT5G18650 322 / 6e-111 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) AT3G62970 302 / 1e-102 zinc finger (C3HC4-type RING finger) family protein (.1) AT1G74770 190 / 2e-54 zinc ion binding (.1) AT1G18910 188 / 1e-53 zinc ion binding;zinc ion binding (.1) AT3G18290 188 / 2e-53 BTS, EMB2454 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G005700 [exp] 408 / 3e-144 AT5G22920 437 / 8e-156 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.006G121801 [exp] 394 / 2e-139 AT5G22920 398 / 6e-141 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.008G205400 [exp] 330 / 3e-114 AT5G18650 466 / 2e-168 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Potri.014G134400 [exp] 310 / 3e-106 AT3G62970 393 / 3e-139 zinc finger (C3HC4-type RING finger) family protein (.1) Potri.012G055100 [exp] 184 / 4e-52 AT3G18290 1641 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.010G122200 [exp] 181 / 3e-51 AT3G18290 1578 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.008G123300 [exp] 181 / 4e-51 AT3G18290 1604 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Potri.015G066600 [exp] 163 / 7e-45 AT1G74770 1199 / 0.0 zinc ion binding (.1) Potri.014G170400 [exp] 43 / 5e-05 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012811 [exp] 328 / 5e-113 AT5G18650 465 / 1e-167 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10033969 [exp] 310 / 6e-106 AT5G18650 449 / 2e-161 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10023914 [exp] 233 / 6e-75 AT5G22920 225 / 8e-72 CHY-type/CTCHY-type/RING-type Zinc finger protein (.1) Lus10008628 [exp] 182 / 2e-51 AT1G74770 1024 / 0.0 zinc ion binding (.1) Lus10034346 [exp] 179 / 2e-50 AT3G18290 1467 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10005111 [exp] 177 / 6e-50 AT3G18290 1592 / 0.0 embryo defective 2454, BRUTUS, zinc finger protein-related (.1) Lus10042190 [exp] 150 / 6e-41 AT1G18910 563 / 0.0 zinc ion binding;zinc ion binding (.1) Lus10042188 [exp] 104 / 5e-27 AT1G74770 253 / 2e-78 zinc ion binding (.1) Lus10008627 [exp] 90 / 8e-20 AT2G02800 475 / 6e-164 protein kinase 2B (.1.2) Lus10036664 [exp] 43 / 9e-06 AT3G18290 81 / 5e-20 embryo defective 2454, BRUTUS, zinc finger protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05495 [poplar] [flax] zf-CHY CHY zinc finger CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain CL0229 [poplar] [flax] PF14599 [poplar] [flax] zinc_ribbon_6 Zinc-ribbon
Representative CDS sequence Show only first row Show all	>Potri.006G245400.1 pacid=42768300 polypeptide=Potri.006G245400.1.p locus=Potri.006G245400 ID=Potri.006G245400.1.v4.1 annot-version=v4.1 ATGGCAGAAGTAGATATTAAGAGTTTTGATCCTCAAGAATTCAGACTATTTCAACAAATGGGCTCATGCTCACAGCATTTTAATGAAGATTTCATCTTCT CAGAAGAATCAATGAATGTGGAAACTCCTCAAATACTAGATAAAGGATTAATGGAATATGGATGCCTGCACTATCGGAGAAGGTGCCGCATCAGAGCACC TTGCTGTAATGAAGTATTTGATTGCCGTCATTGTCATAACGAGGCGAAGAACAATATCAATGTTGATCAGAAGCATAGACATGACATGCCACGCCATGAA GTCAAACAGGTGATATGCTCGCTTTGTGGCACTGAACAAGAGGTTCAACAAGTTTGTATCAACTGTGGTGTGTGCATGGGAAAGTACTTCTGTGAGACTT GCAAGCTGTTTGATGATGATACATCTAAGAAACAGTATCATTGTGATGGCTGTGGGATTTGCAGAATTGGAGGACCTGAGAATTTCTTCCATTGTTACAA ATGTGGCTGCTGCTACTCGAATCTTCTGAAGAATAGCCACCCCTGTGTAGAGGGCGCGATGCATCATGACTGCCCTGTCTGCTTTGAGTTTTTATTTGAG TCGAGATATGATGTGACTGTCTTGCCATGTGGACACACCATTCACGAGAGCTGCTTAAAGGAAATGAGGGATCATTATCAATATGCTTGCCCTCTTTGCT CGAAGTCAGTTTGTGATATGTCTAAGGTATGGGAGAAATTCGACATGGAAATTGCAGCCACACCAATGCCAGAACCTTACCTGAATAAAATGGTTTGGAT CCTTTGCAATGATTGTGGAAAGTCCTCAGAAGTGCAATTCCATGTAGTAGCTCAGAAATGCATGAACTGCAAGTCCTATAATACTCGTCAAACAAGAAGC TGA
AA sequence Show only first row Show all	>Potri.006G245400.1 pacid=42768300 polypeptide=Potri.006G245400.1.p locus=Potri.006G245400 ID=Potri.006G245400.1.v4.1 annot-version=v4.1 MAEVDIKSFDPQEFRLFQQMGSCSQHFNEDFIFSEESMNVETPQILDKGLMEYGCLHYRRRCRIRAPCCNEVFDCRHCHNEAKNNINVDQKHRHDMPRHE VKQVICSLCGTEQEVQQVCINCGVCMGKYFCETCKLFDDDTSKKQYHCDGCGICRIGGPENFFHCYKCGCCYSNLLKNSHPCVEGAMHHDCPVCFEFLFE SRYDVTVLPCGHTIHESCLKEMRDHYQYACPLCSKSVCDMSKVWEKFDMEIAATPMPEPYLNKMVWILCNDCGKSSEVQFHVVAQKCMNCKSYNTRQTRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25560			CHY-type/CTCHY-type/RING-type ...		Potri.006G245400 [exp]	0	1
AT2G30600			BTB/POZ domain-containing prot...		Potri.002G010100 [exp]	2.82	0.7429
AT4G11110		SPA2	SPA1-related 2 (.1)		Potri.003G137100 [exp]	4.24	0.7922
AT2G39580			unknown protein		Potri.010G208200 [exp]	5.65	0.8040
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284600 [exp]	7.93	0.7463
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.014G090601 [exp]	8.12	0.7261
AT2G35510		SRO1	similar to RCD one 1 (.1)		Potri.005G149701 [exp]	8.24	0.7610
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	9.48	0.7203
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.001G284301 [exp]	14.38	0.7421
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092250 [exp]	16.49	0.7163
AT3G19770		ATVPS9A	ARABIDOPSIS THALIANA VACUOLAR ...		Potri.013G092100 [exp]	30.59	0.7237

Compare expression of checked genes

Potri.006G245400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.