Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 518 / 1e-180 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 510 / 6e-174 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 491 / 2e-165 Leucine-rich repeat (LRR) family protein (.1) AT5G25550 449 / 2e-154 Leucine-rich repeat (LRR) family protein (.1) AT3G22800 426 / 8e-145 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 414 / 2e-136 LRX1 leucine-rich repeat/extensin 1 (.1) AT1G62440 413 / 2e-135 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G49490 407 / 5e-133 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 399 / 2e-131 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 405 / 6e-131 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035100 [exp] 698 / 0 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 536 / 0 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 534 / 0 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 445 / 2e-147 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083000 [exp] 430 / 4e-147 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.018G151000 [exp] 428 / 9e-145 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.004G146350 [exp] 409 / 1e-133 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.009G108100 [exp] 409 / 2e-130 AT3G19020 567 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 382 / 2e-129 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 516 / 8e-177 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 470 / 2e-162 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 408 / 1e-136 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039362 [exp] 394 / 2e-133 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 384 / 8e-127 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10038631 [exp] 376 / 8e-127 AT4G13340 355 / 8e-120 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 370 / 8e-124 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 364 / 1e-121 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 352 / 1e-116 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 349 / 4e-112 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G245600.1 pacid=42766896 polypeptide=Potri.006G245600.1.p locus=Potri.006G245600 ID=Potri.006G245600.1.v4.1 annot-version=v4.1 ATGAAGGCAAAGACTCACATTCTTCCATTCTTTGCCACTCTCACTCTCATTTGCCTGACCACTGCCCAACACCACTCTTTTTCTAGCAATGCTGGCCCTA GGGACTTACAAACAATACATATTAAGCAGAGCCAAAGACAGCTTTTACATTACAGAGAGGAACTTGATATAGAAGATGAGTATCTGATGTTACCAGCTTG CCTCAAATTCGACAACCCTAGACTCAGAAGTGCCTACATTGCACTCCAAGCATGGAAACTAGCCATCATCTCGGACCCATTGAACCTCACATCCAACTGG GTGGGATCCGACGTTTGCAACTACACTGGTGTCTTCTGTGCCACATCTCTCGACAATTCGTCGATTCAAACCGTTGCTGGGATTGATCTAAATCATGGCG ACATGGCAGGGCACTTGGTTGCAGAGCTCGGACTCCTGACGGACATTGCCTTGTTTCACGTTAACTCCAACAGATTCTGTGGGAAAGTACCAAAATCTTT CAAGAAACTAAAACTACTCTACGAGCTGGATCTAAGCAACAATCGTTTTGCGGGCAGGTTTCCGTACGTTGTTCTTGATCTTCCAAAGCTCAAGTATCTT GATCTTCGATTTAATGAGTTTGAAGGTGATTTGCCGAAAGAACTGTTTGACAAGGATCTCGACGCGATATTCATAAACCACAACAGGTTTGCTCTTGAAT TACCTGATAATTTTGGTAACTCGCCGGTTTCTGTTATTGTTCTTGCAAATAATAAATTCCACGGGTGTTTTCCAACAAGTTTGGTTAACATGTCTAAGAA CCTAAATGAAGTGATTCTCATGAACAATGGCTTGCGCTCGTGTTTACCTAGGGAGATAGGATTGCTTAAGAAGGTGACAGTTTTTGATGCGAGTAATAAC AAACTCTACGGTTCTTTGCCTGACAACATCGGAGAAATGGAGAGTCTAGAACTGCTAAATGTGGCACATAATATGCTGTCAGGAAATATCCCTGGTAGCG TGTGTTTGCTTCCACATCTGAAGAACTTTAGTTATGCTTATAACTTCTTCACTGGTGAACCACCAGCGTGTTTGGATTTGGAAAATTTTGATGATGGCAG GAATTGTTTGAGGAACAGGCCCAAACAGAGATCAACATTGCAATGTAAAGTGTTCTTGTCTAGACCAGTTAAGTGTGAGGCTTTTAAATGTCACAAGTTC GATCCTTCTCCACCGCCCCCACCACCGCCACCACAATCACCACCACCTCCACCTCCACCTTCACCAGCTCCTCCATCAGCATTACCCTCACCACCCCCTC CATCATCAATGCCACCACCACCCCCAATACATCCGCCTCCCCCCTTCTACTCCCCACCACCCCCGCCAAACCCACCTCCACCACCTCCGCCACGTCCTAT TTATCAATCACCCCCTCCGCCACCCCCTCCAAATTCACCACCACCACCTCCCTCATGTGCAGAACCCCCTCCACCTCCATCACCTCCACCATGCCATGAG CAACCACCTCCACCATCACCTCCAGTTCAATACTTGCCGCCTCCACCTCCACCAGTTTATAATTCACCGCCTCCACCAGCTCCAGTGTATAATGGTCCAT TGCCACCTATTAGTGGCATACCTTACGCATCTCCACCACCTCCACCGCTCTACTAA
AA sequence Show only first row Show all	>Potri.006G245600.1 pacid=42766896 polypeptide=Potri.006G245600.1.p locus=Potri.006G245600 ID=Potri.006G245600.1.v4.1 annot-version=v4.1 MKAKTHILPFFATLTLICLTTAQHHSFSSNAGPRDLQTIHIKQSQRQLLHYREELDIEDEYLMLPACLKFDNPRLRSAYIALQAWKLAIISDPLNLTSNW VGSDVCNYTGVFCATSLDNSSIQTVAGIDLNHGDMAGHLVAELGLLTDIALFHVNSNRFCGKVPKSFKKLKLLYELDLSNNRFAGRFPYVVLDLPKLKYL DLRFNEFEGDLPKELFDKDLDAIFINHNRFALELPDNFGNSPVSVIVLANNKFHGCFPTSLVNMSKNLNEVILMNNGLRSCLPREIGLLKKVTVFDASNN KLYGSLPDNIGEMESLELLNVAHNMLSGNIPGSVCLLPHLKNFSYAYNFFTGEPPACLDLENFDDGRNCLRNRPKQRSTLQCKVFLSRPVKCEAFKCHKF DPSPPPPPPPPQSPPPPPPPSPAPPSALPSPPPPSSMPPPPPIHPPPPFYSPPPPPNPPPPPPPRPIYQSPPPPPPPNSPPPPPSCAEPPPPPSPPPCHE QPPPPSPPVQYLPPPPPPVYNSPPPPAPVYNGPLPPISGIPYASPPPPPLY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G245600 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G096000 [exp]	5.19	0.9854
					Potri.008G104900 [exp]	5.47	0.9812
AT1G68560		AXY3, TRG1, XYL...	thermoinhibition resistant ger...		Potri.008G120000 [exp]	7.34	0.9547	XYL1.2
AT2G30220			GDSL-like Lipase/Acylhydrolase...		Potri.013G153000 [exp]	7.34	0.9846
AT5G04530		KCS19	3-ketoacyl-CoA synthase 19 (.1...		Potri.013G120100 [exp]	7.54	0.9835
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126500 [exp]	7.74	0.9818
AT5G66460		MAN7, AtMAN7	endo-beta-mannase 7, Glycosyl ...		Potri.005G120500 [exp]	8.94	0.9345
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.013G051000 [exp]	11.13	0.9821
AT5G18020			SAUR-like auxin-responsive pro...		Potri.009G126400 [exp]	14.69	0.9804
AT1G29140			Pollen Ole e 1 allergen and ex...		Potri.011G111300 [exp]	15.42	0.9808

Compare expression of checked genes

Potri.006G245600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.