Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G60560 648 / 0 SWIM zinc finger family protein (.1.2) AT4G13970 606 / 0 zinc ion binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106000 [exp] 655 / 0 AT1G60560 1192 / 0.0 SWIM zinc finger family protein (.1.2) Potri.014G054600 [exp] 651 / 0 AT4G13970 1033 / 0.0 zinc ion binding (.1) Potri.002G140800 [exp] 606 / 0 AT4G13970 940 / 0.0 zinc ion binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035898 [exp] 657 / 0 AT1G60560 1123 / 0.0 SWIM zinc finger family protein (.1.2) Lus10025765 [exp] 651 / 0 AT1G60560 1112 / 0.0 SWIM zinc finger family protein (.1.2) Lus10003970 [exp] 634 / 0 AT4G13970 964 / 0.0 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04434 [poplar] [flax] SWIM SWIM zinc finger
Representative CDS sequence Show only first row Show all	>Potri.006G245800.5 pacid=42767726 polypeptide=Potri.006G245800.5.p locus=Potri.006G245800 ID=Potri.006G245800.5.v4.1 annot-version=v4.1 ATGAAGGGCCATGAACCAAAGATGCCAAGAATGGAGGACATTCTTAGTCTTCCAGTACAAGATCCTCCTTGTGCAGAGTTTTCTGCTGCTCATATAAAGT GGGAGAAAGTAGAAGGTGGTCGACAAGGTGGCGATGATATTGCCCTAATCCCTTTTGCTAGAGTGGATGATTTTGTAAAAGGAGAATCTTCAAATGCAGA ATGTCCTGCTAGCTTTCGAATTGAGTCTAGAAGGAAGAGATCTGAAGGGAGCATCAGCAAACCAAGGGTCGATGGCTATCTTGAATATACACTATATTGG TGTTCATATGGTCCTGAAGATTATCGAGATAGTGAGTCCACTATGGGGGATGGTTCTCACACCAAACCTGCGACTGGGAAGGGAAGCAGACCCGGGAGGC GTCACATGATGAGAGGTTGCCTTTGCCATTTCACTGTAAAACGCTTATACACTCGCCCCTTCCTTGCTCTTATCATATATAATCAGAGAAAACATGTAGA TAAAACAGGGGCCCCATGTCATGGGATACTTGATGTGGATGCTGTGGGGACAAGAGCTATGTATGCTCCAAGGATTTCAGAAGAATTGCGCCAGAAAGTG ATGTCGTTGCTATATATTGGAATATCTTTGGACAATATAATCCAGCATCATGCAGAGGTGGTGCAGGGGCATGGTGGCCCCCTCAACCGAGATGATTTGC TCACTCGGAATGATGTTCGCAACATGGAGAGGATTGTTCGTAATTCATCTTACAAATTGCATGCAGATGATGAATTCAGTGTAAAGATGTGGGTGCAGCG CCACCAGAAGCATGTTTTTTTCTTCCAAGATATGTCAAGCACAGAACCTTTTATTCTGGGGATACAGACAGATTGGCAGCTGCAGCAGATGATCCGTTAT GGACATAGTGGTTCGGTAGCTTCTCATTCTACATTTGGCTTGAAGAAACTTAAGTATCCCCTGTGTACTTTACTGGTTTTTGACTCGTCTCAAAATGCAA TTCCGGTTGCTTGGATCGTTGCCTCCTCATTTGTTACTCAAGATATCCACAAATGGATTGGCTCTTTGGCTGAAAGAATCCGAAGCAAGGACCCGAGATG GAGGCCTAATGCCTTTTTAGTGGATGATCCTTCTTTTGATATTTCTTTCATAAGAGAGGCTTTCCAATGCCGGTTCCTATTATGTGCCTGGCATGTTCGC CGTGCTTGGATGAGAAGTCTTTTAAAGAAATGCTGCAACATTGATGTCCAGCGAGAGATGTTTAAGCACTTGGGTTGGATTTTGTATTCTACAAGAAGTG GGCCAAATGCTGATAATGCAGTTGAAGAGTTCATGCAAGTATATGTTGACCAATGTATCTTTATGGATTATTTCAAGAGGAGATGGTTGCCATTTATAGA GTTGTGGATTAATAGCATAAGGTCTCTCCCTGTAGCCAGTACGGAGCCCCTGGCTGCAATTGAATCCTACCACTTAAGGTTGAAATCCAAGCTTTTCGAT CAGCAATATGCTAATTCCTATACAAGAATTGACTGGTTGATCCACACTTTGACAACTGAATTCCACTCCTTATATTGGTTAGATCAATACAGTGCAGAGA CTGGGTATTTCACAAATATAAGGGACAAGTCTTTCTTAACTAATGCTTGGTATCAGGCCCTGCTCATCCCTGATGTCGATGTGATATTGGATGAACAAAA TCTACAGCTTGCAAAAGTCATCTCCCAGACCAATAGAAGTCTGGCATATACAATTTGGAACCCTGGTTCTGAGTTCGCCCTCTGTGACTGTCCCTGGTCA AGACAGGGAAATCTCTGTAAGCATGTCATCAAGGTGGCAATTTTATGTAAAAATCGACAGGTTGCAAGGCCATTATTGGCATCTCAAGTTTATCGCCAGG CCTTGCTTACCCTTCTGCAGAACCCCCCCGATGATCCTCTGGTTCTTGAGCATGCGATTTTGCGTGTTAGCCGCTTGCAACAGGATATCAAAGGTTTGGA AGACTTGTCTAATAATGGGTTACTCCAGCCATCACCACCTGAAATGAACACTCAAGTAGGAGATAGTCTTCTGCTTTTCCCACACCTTCATTGA
AA sequence Show only first row Show all	>Potri.006G245800.5 pacid=42767726 polypeptide=Potri.006G245800.5.p locus=Potri.006G245800 ID=Potri.006G245800.5.v4.1 annot-version=v4.1 MKGHEPKMPRMEDILSLPVQDPPCAEFSAAHIKWEKVEGGRQGGDDIALIPFARVDDFVKGESSNAECPASFRIESRRKRSEGSISKPRVDGYLEYTLYW CSYGPEDYRDSESTMGDGSHTKPATGKGSRPGRRHMMRGCLCHFTVKRLYTRPFLALIIYNQRKHVDKTGAPCHGILDVDAVGTRAMYAPRISEELRQKV MSLLYIGISLDNIIQHHAEVVQGHGGPLNRDDLLTRNDVRNMERIVRNSSYKLHADDEFSVKMWVQRHQKHVFFFQDMSSTEPFILGIQTDWQLQQMIRY GHSGSVASHSTFGLKKLKYPLCTLLVFDSSQNAIPVAWIVASSFVTQDIHKWIGSLAERIRSKDPRWRPNAFLVDDPSFDISFIREAFQCRFLLCAWHVR RAWMRSLLKKCCNIDVQREMFKHLGWILYSTRSGPNADNAVEEFMQVYVDQCIFMDYFKRRWLPFIELWINSIRSLPVASTEPLAAIESYHLRLKSKLFD QQYANSYTRIDWLIHTLTTEFHSLYWLDQYSAETGYFTNIRDKSFLTNAWYQALLIPDVDVILDEQNLQLAKVISQTNRSLAYTIWNPGSEFALCDCPWS RQGNLCKHVIKVAILCKNRQVARPLLASQVYRQALLTLLQNPPDDPLVLEHAILRVSRLQQDIKGLEDLSNNGLLQPSPPEMNTQVGDSLLLFPHLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G60560			SWIM zinc finger family protei...		Potri.006G245800 [exp]	0	1
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	10.95	0.6708
AT5G49160		MET2, DMT1, DMT...	METHYLTRANSFERASE I, METHYLTRA...		Potri.018G138000 [exp]	12.00	0.6776	MET1.1
					Potri.009G168700 [exp]	12.04	0.7835
AT1G79890			RAD3-like DNA-binding helicase...		Potri.001G182600 [exp]	14.56	0.6912
AT3G47930		ATGLDH	"L-galactono-1,4-lactone dehyd...		Potri.006G043232 [exp]	17.43	0.6582
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G130600 [exp]	17.94	0.7788
AT4G10800			unknown protein		Potri.003G144700 [exp]	18.49	0.6345
AT5G66150			Glycosyl hydrolase family 38 p...		Potri.007G056300 [exp]	32.71	0.6698
AT1G53903			Protein of unknown function (D...		Potri.003G071900 [exp]	52.76	0.6408
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	54.03	0.6485

Compare expression of checked genes

Potri.006G245800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.