Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32630 226 / 6e-64 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT4G13350 224 / 1e-63 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT1G08680 202 / 7e-56 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT5G54310 81 / 8e-16 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 64 / 4e-11 AGD15 ARF-GAP domain 15 (.1) AT3G53710 63 / 5e-10 AGD6 ARF-GAP domain 6 (.1.2) AT4G05330 59 / 6e-09 AGD13 ARF-GAP domain 13 (.1) AT4G21160 58 / 1e-08 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT2G37550 58 / 1e-08 ASP1, AGD7 yeast pde1 suppressor 1, ARF-GAP domain 7 (.1.2) AT2G35210 57 / 2e-08 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035000 [exp] 1026 / 0 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.018G076200 [exp] 317 / 1e-96 AT4G13350 371 / 3e-119 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Potri.013G068300 [exp] 210 / 7e-58 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.001G406300 [exp] 82 / 7e-16 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G127000 [exp] 82 / 7e-16 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 81 / 1e-15 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.004G035800 [exp] 71 / 2e-12 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 68 / 2e-12 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.001G026400 [exp] 57 / 1e-08 AT3G07940 211 / 4e-66 Calcium-dependent ARF-type GTPase activating protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022113 [exp] 374 / 2e-117 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10017729 [exp] 298 / 7e-90 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10020306 [exp] 212 / 1e-59 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10005686 [exp] 213 / 4e-59 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10033090 [exp] 184 / 3e-49 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10011238 [exp] 86 / 4e-17 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10018445 [exp] 84 / 8e-17 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 81 / 8e-16 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 76 / 5e-15 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10004125 [exp] 60 / 2e-09 AT4G17890 283 / 4e-94 ARF-GAP domain 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.006G246100.8 pacid=42767399 polypeptide=Potri.006G246100.8.p locus=Potri.006G246100 ID=Potri.006G246100.8.v4.1 annot-version=v4.1 ATGACGAAGAAAAACAAAGAAGAGGAGAGAATTGGGAAGATAATTCGCGGTCTTCTTAAAATTCCTGAGAATATTCGTTGCGTTAATTGCAATAGCTTGG GACCACAATATGTCTGCACAACTTTCTTCACCTTTGTTTGCAAAAATTGTAGTGGAATTCATCGGGAATTTACGCATAGAGTTAAATCAATTTCGATGGC GAAATTTAACGCGGAAGAAGTTAGTGCTCTTCAAGCAGGAGGGAATGAGAGAGCGAGACAAATTTTTTTGAAGGAATGGAATCCGCAGCGCAATCAGCTT CCTGATAGCAGTAATCAACAAAAGGTTCGAGATTTTATCAAGCATGTTTATGTGGATAGAAGATACACTGGTGAGAAAAGTCATGAGAAACTCCCACGGC TGAGATTGAATGACAAGGAGGACTCTGGTGAGAACAGGTGGGCTGTTTTATATTCTGGTGGATCTAGAAGTCCAAACTATGAAGATAGACATGGGCGGAG TGAAAGATCTGGTTTTAGTGGAAGAGCTGATGACAAGACAATCAAATATTATTATGATGAAAGAAGAAGTCCTCGTTATTCCCAAGAAAATTCAAGATAT GGAGGTTTTATGAGAAGTCCTGTTCGCTTTGAGGTTGTTGATGACAGGTTTCGAGATGATGGAATACGAAGTAGCAGGCAGTCTGGTGTCCACCCGTTTG CTCACAGAGAGTCCAGGTTTGGGAACAAGTTATCTGACATTCAAAAGGACATGCATCAGTCAGGGTCCCATGCCCCTGTGGTACGCCCTCTCAAACATAT TCTAGGGGGAAATATTCCACCTCTACAGGTTGGTGAGCATTCTAAAGCACCGAACATGAAGGATGCAGATGGTTCTGCGCGCAATCAGATGCCCCCTTCT TCTGGCCCCATGGAATCTGCTGATGGGAATCCTGTGCAACAGATAAGTCACAATTCAGAAAGCTCGGTTGATTTAAATTCCAATTCCAAGTCCTCCGATG CTTCCGCAGCACTTCCTGCTCAGGAGAATCTTCTGTCCAGTGAAGGTGGCAACTGCTCCTCGCATGACTCCTCTGGAAAGAAGAACGCACTTCCAGCCCC AAAACAAAATACTTTGGAATTTTTACTGTTGGAGTTAGCTCCCTCAGTCATTCCTTCTGACAAGGCTTCTGAAATACCAACCAATGATAATCCATCATCA GCTGCATCTGGAGAAAATATAATCATGAGTAGTGGTGCTTCAGCAGCTGGGCCTTCGGGGCAGATGTTAACATTACAAAGTAGTGCTGTTGCTTCTGCAA TTGCATCTGGAGGGAACATGCCTGCTGCAAGTGTTTCACAAACTGTACCTGTGGAGCAGATGTCAGCACTTCCCTGTAGCGCTGGTGCTTCTACAGCTGT GTCTGGAGGCACCATGCCTGTGGGAAGTATTTCACCAGCTGCACCTGTGGTGCAGACATCAACTGCATCTGGGATCAGCCCAGCTGTGCATGTTGAGGAG ATATTAACACTAGTTGATGCTTTTGATGCATCCACAATACCTTCAAATAATTCTTTGCCAGCACAACCTTCTAATGGAGTTCCTCCACTAGCTGCACTTG ATAACAGTCGTGACTCAACTTTCGAGGTTCTTGACGGGCAACAGATATCCACCATGCAGCAACAACAGCCTGTTGATAGTAGCTCTGCTGGACAACAGGC TACTAAAACACCAGCTGGAGTGGTAAATGATCAGCTGTGGACTTCATCAAATGTTCATATTTCTCAGGGATCTCCAGATTTCCTTGGTGAATACCTTTCT CAAGATGTCTCAAAACCAGCCCAAGAATCCAATTCCGAAGCTCAATCCCAGCCTCTTCCATCAGAAACAAAGTCTAGTGGAAGAAAGGAACTTCCAGCGG ACCTTTTTACTGGAACTTATTCACCAGCTCCAGACCCAATACCAGGTTGTCAAATTTGTCCACCTTATGGCATGGGATTCAACATGCAGTATTATCCTAA TGCAATGCCTGTGCCAGCATTTCCCAACATAGCAAAATCAACAAACCCATTTGATCTTAACGGCGACACCACTTCGGTACAACCCCTACCATTTCCTTCC ATGGGAAATTTGCATGGTACTCTCCCAGTGCATACTTCTGCAATGCCTCCACATTCCCTGTCCTTTGCATCAGCCATGCCTTATGGTGGATACATGGGAC AACAAGCAGACACGAATTTGCCTCATTCCAGACCACATGGGCCTTGCGACTTTGGCAGTGAGGGAGTTCCTTTTGGGTCTTTGAATATGGCTCAACAACC AACTGGTGGATACTTGCTCCCAACCTCCTCAAGTTCTCTTCGTTTAAAGGGAGGAAATCCATTTGGATAG
AA sequence Show only first row Show all	>Potri.006G246100.8 pacid=42767399 polypeptide=Potri.006G246100.8.p locus=Potri.006G246100 ID=Potri.006G246100.8.v4.1 annot-version=v4.1 MTKKNKEEERIGKIIRGLLKIPENIRCVNCNSLGPQYVCTTFFTFVCKNCSGIHREFTHRVKSISMAKFNAEEVSALQAGGNERARQIFLKEWNPQRNQL PDSSNQQKVRDFIKHVYVDRRYTGEKSHEKLPRLRLNDKEDSGENRWAVLYSGGSRSPNYEDRHGRSERSGFSGRADDKTIKYYYDERRSPRYSQENSRY GGFMRSPVRFEVVDDRFRDDGIRSSRQSGVHPFAHRESRFGNKLSDIQKDMHQSGSHAPVVRPLKHILGGNIPPLQVGEHSKAPNMKDADGSARNQMPPS SGPMESADGNPVQQISHNSESSVDLNSNSKSSDASAALPAQENLLSSEGGNCSSHDSSGKKNALPAPKQNTLEFLLLELAPSVIPSDKASEIPTNDNPSS AASGENIIMSSGASAAGPSGQMLTLQSSAVASAIASGGNMPAASVSQTVPVEQMSALPCSAGASTAVSGGTMPVGSISPAAPVVQTSTASGISPAVHVEE ILTLVDAFDASTIPSNNSLPAQPSNGVPPLAALDNSRDSTFEVLDGQQISTMQQQQPVDSSSAGQQATKTPAGVVNDQLWTSSNVHISQGSPDFLGEYLS QDVSKPAQESNSEAQSQPLPSETKSSGRKELPADLFTGTYSPAPDPIPGCQICPPYGMGFNMQYYPNAMPVPAFPNIAKSTNPFDLNGDTTSVQPLPFPS MGNLHGTLPVHTSAMPPHSLSFASAMPYGGYMGQQADTNLPHSRPHGPCDFGSEGVPFGSLNMAQQPTGGYLLPTSSSSLRLKGGNPFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.006G246100 [exp]	0	1
AT4G10270			Wound-responsive family protei...		Potri.013G147900 [exp]	11.40	0.8379
AT1G23230			unknown protein		Potri.010G108350 [exp]	15.49	0.8458
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.001G355900 [exp]	19.07	0.8311
AT1G43850		SEU	SEUSS transcriptional co-regul...		Potri.010G052150 [exp]	22.44	0.8382
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	30.85	0.8412
AT3G21200		PGR7	proton gradient regulation 7 (...		Potri.008G008801 [exp]	37.30	0.8149
AT5G25800			Polynucleotidyl transferase, r...		Potri.002G073300 [exp]	41.53	0.8166
AT5G47540			Mo25 family protein (.1)		Potri.019G057100 [exp]	48.74	0.8222
AT3G13980			unknown protein		Potri.006G144700 [exp]	49.17	0.8097
AT1G30800			Fasciclin-like arabinogalactan...		Potri.001G440800 [exp]	54.77	0.7833

Compare expression of checked genes

Potri.006G246100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.