Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32620 1020 / 0 Enhancer of polycomb-like transcription factor protein (.1.2) AT5G04670 169 / 7e-43 Enhancer of polycomb-like transcription factor protein (.1) AT4G31880 66 / 2e-10 unknown protein AT1G15940 61 / 7e-09 Tudor/PWWP/MBT superfamily protein (.1) AT1G80810 57 / 9e-08 Tudor/PWWP/MBT superfamily protein (.1.2) AT5G10950 54 / 7e-07 Tudor/PWWP/MBT superfamily protein (.1) AT4G02070 53 / 2e-06 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT5G47690 52 / 5e-06 binding (.1.2.3) AT1G05830 52 / 6e-06 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT2G31650 50 / 2e-05 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034900 [exp] 2457 / 0 AT4G32620 613 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Potri.008G024300 [exp] 186 / 3e-48 AT5G04670 488 / 3e-162 Enhancer of polycomb-like transcription factor protein (.1) Potri.010G235900 [exp] 169 / 7e-43 AT5G04670 518 / 2e-173 Enhancer of polycomb-like transcription factor protein (.1) Potri.003G181300 [exp] 69 / 3e-11 AT1G80810 231 / 3e-64 Tudor/PWWP/MBT superfamily protein (.1.2) Potri.014G121701 [exp] 68 / 6e-11 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.001G046500 [exp] 61 / 6e-09 AT4G31880 267 / 1e-76 unknown protein Potri.016G005400 [exp] 54 / 2e-06 AT5G47690 1698 / 0.0 binding (.1.2.3) Potri.018G020400 [exp] 53 / 2e-06 AT4G31880 389 / 3e-120 unknown protein Potri.006G004750 [exp] 52 / 4e-06 AT5G47690 1681 / 0.0 binding (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041252 [exp] 1435 / 0 AT4G32620 923 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10021959 [exp] 1368 / 0 AT4G32620 870 / 0.0 Enhancer of polycomb-like transcription factor protein (.1.2) Lus10008985 [exp] 135 / 6e-32 AT5G04670 325 / 2e-99 Enhancer of polycomb-like transcription factor protein (.1) Lus10028841 [exp] 136 / 9e-32 AT1G66950 1374 / 0.0 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) Lus10010010 [exp] 59 / 3e-08 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10030133 [exp] 57 / 3e-08 AT1G15940 63 / 4e-11 Tudor/PWWP/MBT superfamily protein (.1) Lus10018332 [exp] 59 / 4e-08 AT4G31880 464 / 2e-149 unknown protein Lus10017121 [exp] 58 / 6e-08 AT4G31880 473 / 2e-152 unknown protein Lus10009948 [exp] 54 / 6e-08 AT1G15940 56 / 1e-09 Tudor/PWWP/MBT superfamily protein (.1) Lus10039082 [exp] 52 / 4e-06 AT5G47690 1661 / 0.0 binding (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10513 [poplar] [flax] EPL1 Enhancer of polycomb-like
Representative CDS sequence Show only first row Show all	>Potri.006G246200.2 pacid=42770578 polypeptide=Potri.006G246200.2.p locus=Potri.006G246200 ID=Potri.006G246200.2.v4.1 annot-version=v4.1 ATGGAAAATAGAGTAGGAAAGTCTCATGGAGTGGGAATTCCTAAGAAGTCGAGATCCTTGGATCTCAAGAGTCTCTATGAAACTAAAAATTCAAAATGGT ATCAAAATAGTAATAATTTGAAGCGGAAGGGTGGTGGTATAGGTGATGATGAGAAGGGACATAAAAACAAGAAGAGTAGAAAGGAGGTTTGCATTAGTAG TTTTAAGAATGTTAACAGTAGCTATAGTAAGAGTTTAAAGGAAGTGTATAATGGGAGTTTGAGTTCAGGTTTGAAGGACCCGAGGACTGGGTTGATTCAG AGACTGGCTGATAGTAATGGGTTTAGTGGTGCTTCGTTACCCTTGGAAGACGGGGCTGTTAAAATTCCTAGGCGAAAACGGGGTTTTGTGGGGCGAAGGA AGGTGGACAATGGTAGTGAAGGGGGCAAGCTGGCAAGAGGGTTTGGCAGGGAAGTGGGCAATGCTGACCAGGCTGATAAGTTAACCGGTGAAGATGAGGG TAAAGGGGTTGAGAATGGCAGTCAGGAGTCGAAGGCAGTGGTGATTTTGGTTAGTGTAGTGGGTGATGTGGATCAGGCTAGCAAGTTAACTGGTGAAGGT AAAGCTAAGCAGGTTGAGCATTCAAAGGCTAAACAGAAGAAAGGTTCTGATGATTTGAAAGAAAATAGAAATGGTGAATTGGATGCAAGTAGGCATTTGA AGGAAGAAGACAGGCATGATGATCATTCAGTTGCTACAAAAAGAGATTCATTGTTGAAGAAGTCTGACAATTGCCCTTTGGTTGTTAATAATGGGGATTC ATCTCTGAAAAAGTCACTGAGGAAGCGGAGTAGGAAAAAAAAGGATATGGTGTCTAACAAGAAAAGAACCAAGGAGGCTGACCCATCAGTTGATGCTTCT ATAAAGATCAGTGATGTTTTGCACGATGAGGATGAGGAGAATCTTGAAGAGAATGCAGCAATGATGCTATCATCACGATTTGATCCAAGCTGCACGGGTT TTTCTTCAAACAGCAAAGCCTCAGCCTCACCATCTAAAGATGGTTTCCAAGAATTTGCTGCTCGTGAGTCTAGCTATGTCTCTGGATCTGAATCTTCATC TGTTGATACTGATGGTAGAGTATTACGACCTAGGAAACAGAACAAAGAGAAGGGTAACACGAGGAAACGGCGCCATTATTATGAAATTTTCTCTGGGGAC TTGGATGCACATTGGGTTCTCAACCGGAGAATAAAGGTCTTTTGGCCTTTGGACCAGAGTTGGTATCATGGTCTTGTTGGTGACTATGACAAAGATAGGA AGCTTCATCATGTAAAATATGATGACCGGGATGAGGAATGGATTAATCTCCAAAATGAAAGATTTAAACTCTTGATGCTCCCTTGTGAAGTTCCAGCTAA GACCAGAAGGAAAAGGTCAGTGACAAGAAACAAGTGCTCCAATGGGGGAAAGGAAAAACTGATGTCTAGAAAAGAAAAGAGGGACCTGATGACAGAGGAT GATAGCTATGAAGGGGCTTATATGGACTCAGAGCCTATCATCTCGTGGTTGGCTCGATCTACTCATAGAGTCAAATCTTCTCCTCTTTGTGCCTTGAAGA AACAGAAAACTTCTTATCTATCTTCTACTAGGACACCACTGTCTTCCCTAAACAGGGATAGAGGCAAGTTATGTAGTAATTCTGCTTCATCAGAGAGTGT CGCCACTGATGGAAGGAGTGGTTTGCCTGTGATGGAGAAGCCTGTTTACCCCAAAGGTAGTAAGCTCCCTATTGTTTATTACAGGAAGCGGTTCCGCGAG ACAAGCAATGTGTTGTGTCATGAATCCAAGGGTGTTCATATTTCTGCTAGTGTAGCAGAATCTGTTAGATCTCTGGTGCATCATACTGTTAATTCTGGGG CTTTGGAAGAGCATGATACTTCTCTTGGAAGATTGAATCCTGATGAGGATTTGGATAGGTTGGATGCTTTTGATCCTTTATGGTCAACTAATAAAGCAGG GTTGCTGAGATTAAATATTTCTGCCATAGAACCAAGATGGTTCAGGTTCAAGTTAAGCTTCCTATTGCCTTCTGTCCCCCGTCACTACTCATTTGGCTCA GAAATTGTTTGGTTGATCCATGCTATGGCACTGCTTCAGTATGGTATGCTTATGACTACATGGCCAAGGATTCATTTAGAGATGCTTTTTGTCGATAATG GGGTTGGATTGAGGTTTCTCCTGTTTGAAGGTTGCTTGAAAGAGGCTGTAGCTTTTGTTTTCCTGGTCTTGACAATATTTTATCAACCTAATGAGCAGCA GGGGAAATGTGCTGACTTCCAGTTGCCAATAACTTCAATCAGGTTCAAATTCTCTTGCATTCAAGATTTCAGAAAGCAGTTTGCCTTTGCATTCCACAAC TTCTCTGAAGTAGAGAATTCAAAGTGGATATACCTGGACCATAAGCTCAAAAAGCATTGCTTGCTTTCTAGGCAATTACCTCTGTCTGAATGCACTTATG ATAATGTGAAGGCCTTGCAATGTGGAATGAATCAGCTCCTTAGTCCTTGGGCCTGCAGTGATGCCACCTTAAATAAGGTCTCGCATAGGAGGTCTAGAGA GAGCATCGGTCTCGTGGGGTTCTCCAGAGAATCTACTTGTGTTAATGCTAATCTGTCTTCCTCTAAGTCTGATAAAAATCACAGATATTTACCTTCATTT GCGCTTTCTTTTACTGCTGCTCCTACTTTCTTTTTGGGTTTGCATCTGAAGATGCTTATGGAACATAGTATGATGCACATTAACTTTCTGGATCACGATT CAATAGAGCATCCAGAAAAATCCAGTGGTTTGCTGGCTGACAGCTGTTCTAGTGTAGAGGACTGCTCCAAAGAATATTTAGATGGTACTCCTGGTAATGA TTTTAAAGCTTTGTCGATGGGTGCTGACTTTGATGGATGCATATCTCGTGCTAAACCAGAGTCACAAACAGTTGATGGGACTGATCCTGGTTCTCGTACT CTTCTGAAGGGTATTACGGTTGAAATTCCATCAGTTAATTTGAACCAGCATGTTAATAAGGAATTACACAGTGTTCAACGGTCCTCTGATCTGTCATGGA ATATGAATGGTGGCATTATTCCCAGCCCAAACCCTACTGCTCGCAGAAGTACCTGGTATCGAAATAGAAGTAGTTCTGCATCTTTTGGGTGGTCTGATGG AAGGACTGACTTTCTTCAAAACAATTTTGGTAATGGACCTAAGAAGCCACGGACACATGTTTCTTATACATTGCCTTTAGGAGGTTTTGATTACAGCCCG AGGAATAGAGGACAACAGCAGAAAGGGTTTTCACATAAACGAATCAGGACAGCCACTGAGAAGAGGACTTCAGACATTTCCAGGGGTTCTGAAAGAAACT TAGAGTTGTTGTCTTGTGATGCAAATGTGTTGATTACAAATGGTGACAAAGGATGGAGAGAATGTGGGGTGCAGGTTGTACTAGAGCTTTTCGATCATAA TGAGTGGAGGCTTGGTATTAAGCTTTCAGGAACTACAAAGTATTCATACAAGGCACATCAGTTTCTGCAAACTGGGTCAACAAATCGGTTTACACATGCT ATGATGTGGAAAGGAGGAAAAGAATGGACATTGGAATTTCCTGATAGGAGTCAGTGGGTTCTTTTTAAAGAGATGCATGAAGAATGCTACAATCGGAACA TGCGAGCTGCATCAGTTAAAAACATTCCTATTCCTGGGGTCTGCCTGATAGAGGAAAATGATGATAATGGAATAGAAGCACCATTTTTCCGGGGTTTTAA GTACTTTCAGCAGCTGGAAACAGATGTTGAGTTGGCTTTGAATCCATCAAGGGTGTTATATGATATGGATAGTGATGATGAAAAGTGGATGCTGAAAAAT CGAAGTTCTCCAGAAGTCAACAGTAGTTCACGGCAGATTTCAGAAGAAATGTTTGAGAAGGCGATGGACATGTTTGAGAAGGCTGCATATTCTCAACAGC GGGACCAGTTTACATCTGATGAAATAATGAAACTTATGGCTGGAATAGGGCCCACAGGAGCCATCAAAATCATCCATGAATATTGGCAGCATAAGAGGCA GAGGAAGAGAATGCCTCTGATCCGTCATCTCCAGCCACCACTCTGGGAAAGGTATCAGCAGCAATTGAGGGAGTGGGAGCAAGCAATGGAAAGAAGCAGC ACAAGCCTCCCCAGTGGATGCCATGGGAAGGTTGCACTCGAAGACAAGCCACCCATGTATGCTTTCTGTTTGAAACCTCGGGGTTTGGAAGTGCCTAACA AGGGATCAAAACAAAGGTCACACAGGAAATTTTCAGTTGCTGGAAAAAGCAATTCTTTTGCAGGAGATCATGATGGCTTTCATCCTTATGGAAGAAGAAT AAATGGCTTTGCTTCTGGAGATGAAAAGACTATATATCCAATACATAACAATGAATCTTTTGATGATTCCCCATTGCCTCGGATATCACCCAGGTTCTTC TCACCACAAGATGCTTGTGCCCCTAGATATTTCTCAATGACAGGTGATAGGTCTGATAGAAATCATCTCCAGAAACTTCGCAGGACCAAGTCAAAGAAAC TTGGGACCTGTGTGTCTCCCTATGGTACTCAGATGGCTGCTTTATATAACCAGAGAATGATGGATCAGGGAAATGGATTTCATCGGTGGAATGCAAGTTT CTCTGACTGGCCTAGTCAGCAGCATCACCAGATAGATTTTAATGTGAGACATGGCCTTGAACAGTTAAATGGTTCAGATCTTGATGAATTCAGGTTGCGT GATGCTTCTGGTGCAGCTAAGCATGCACTCAATATGGCTAATATCAAGAGAGAAAGGGCACAAAGATTGCTTTACAGGGCAGATCTTGCAATTCACAAGG CTGTGGTTGCTCTAATGAATGCTGAGGCGATAAAAGCTTCTTCTGAGGACTTAAATGGTGATGGGTAG
AA sequence Show only first row Show all	>Potri.006G246200.2 pacid=42770578 polypeptide=Potri.006G246200.2.p locus=Potri.006G246200 ID=Potri.006G246200.2.v4.1 annot-version=v4.1 MENRVGKSHGVGIPKKSRSLDLKSLYETKNSKWYQNSNNLKRKGGGIGDDEKGHKNKKSRKEVCISSFKNVNSSYSKSLKEVYNGSLSSGLKDPRTGLIQ RLADSNGFSGASLPLEDGAVKIPRRKRGFVGRRKVDNGSEGGKLARGFGREVGNADQADKLTGEDEGKGVENGSQESKAVVILVSVVGDVDQASKLTGEG KAKQVEHSKAKQKKGSDDLKENRNGELDASRHLKEEDRHDDHSVATKRDSLLKKSDNCPLVVNNGDSSLKKSLRKRSRKKKDMVSNKKRTKEADPSVDAS IKISDVLHDEDEENLEENAAMMLSSRFDPSCTGFSSNSKASASPSKDGFQEFAARESSYVSGSESSSVDTDGRVLRPRKQNKEKGNTRKRRHYYEIFSGD LDAHWVLNRRIKVFWPLDQSWYHGLVGDYDKDRKLHHVKYDDRDEEWINLQNERFKLLMLPCEVPAKTRRKRSVTRNKCSNGGKEKLMSRKEKRDLMTED DSYEGAYMDSEPIISWLARSTHRVKSSPLCALKKQKTSYLSSTRTPLSSLNRDRGKLCSNSASSESVATDGRSGLPVMEKPVYPKGSKLPIVYYRKRFRE TSNVLCHESKGVHISASVAESVRSLVHHTVNSGALEEHDTSLGRLNPDEDLDRLDAFDPLWSTNKAGLLRLNISAIEPRWFRFKLSFLLPSVPRHYSFGS EIVWLIHAMALLQYGMLMTTWPRIHLEMLFVDNGVGLRFLLFEGCLKEAVAFVFLVLTIFYQPNEQQGKCADFQLPITSIRFKFSCIQDFRKQFAFAFHN FSEVENSKWIYLDHKLKKHCLLSRQLPLSECTYDNVKALQCGMNQLLSPWACSDATLNKVSHRRSRESIGLVGFSRESTCVNANLSSSKSDKNHRYLPSF ALSFTAAPTFFLGLHLKMLMEHSMMHINFLDHDSIEHPEKSSGLLADSCSSVEDCSKEYLDGTPGNDFKALSMGADFDGCISRAKPESQTVDGTDPGSRT LLKGITVEIPSVNLNQHVNKELHSVQRSSDLSWNMNGGIIPSPNPTARRSTWYRNRSSSASFGWSDGRTDFLQNNFGNGPKKPRTHVSYTLPLGGFDYSP RNRGQQQKGFSHKRIRTATEKRTSDISRGSERNLELLSCDANVLITNGDKGWRECGVQVVLELFDHNEWRLGIKLSGTTKYSYKAHQFLQTGSTNRFTHA MMWKGGKEWTLEFPDRSQWVLFKEMHEECYNRNMRAASVKNIPIPGVCLIEENDDNGIEAPFFRGFKYFQQLETDVELALNPSRVLYDMDSDDEKWMLKN RSSPEVNSSSRQISEEMFEKAMDMFEKAAYSQQRDQFTSDEIMKLMAGIGPTGAIKIIHEYWQHKRQRKRMPLIRHLQPPLWERYQQQLREWEQAMERSS TSLPSGCHGKVALEDKPPMYAFCLKPRGLEVPNKGSKQRSHRKFSVAGKSNSFAGDHDGFHPYGRRINGFASGDEKTIYPIHNNESFDDSPLPRISPRFF SPQDACAPRYFSMTGDRSDRNHLQKLRRTKSKKLGTCVSPYGTQMAALYNQRMMDQGNGFHRWNASFSDWPSQQHHQIDFNVRHGLEQLNGSDLDEFRLR DASGAAKHALNMANIKRERAQRLLYRADLAIHKAVVALMNAEAIKASSEDLNGDG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32620			Enhancer of polycomb-like tran...		Potri.006G246200 [exp]	0	1
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	1.41	0.8673
AT5G12400			DNA binding;zinc ion binding;D...		Potri.009G049100 [exp]	1.41	0.8805
AT5G22760			PHD finger family protein (.1)		Potri.004G189600 [exp]	3.74	0.8183
AT4G16310		LDL3	LSD1-like 3 (.1)		Potri.002G027100 [exp]	6.24	0.8448
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Potri.005G047600 [exp]	8.00	0.7714	Pt-EDR1.1
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	9.74	0.7997
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	9.89	0.8416
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G171800 [exp]	9.94	0.7694
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.011G092700 [exp]	10.39	0.8213	Pt-TOP1.2
AT4G03430		EMB2770, STA1	STABILIZED 1, EMBRYO DEFECTIVE...		Potri.013G135300 [exp]	10.81	0.8192

Compare expression of checked genes

Potri.006G246200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.