Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11440 103 / 2e-28 CID5, IPD1 INCREASED POLYPLOIDY LEVEL IN DARKNESS 1, CTC-interacting domain 5 (.1) AT5G25540 91 / 6e-23 CID6 CTC-interacting domain 6 (.1) AT2G26280 41 / 0.0003 CID7 CTC-interacting domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G047700 [exp] 48 / 2e-06 AT2G26280 700 / 0.0 CTC-interacting domain 7 (.1) Potri.006G218900 [exp] 42 / 0.0002 AT2G26280 699 / 0.0 CTC-interacting domain 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021960 [exp] 106 / 4e-29 AT5G25540 98 / 3e-26 CTC-interacting domain 6 (.1) Lus10041253 [exp] 103 / 1e-27 AT5G25540 95 / 6e-25 CTC-interacting domain 6 (.1) Lus10009796 [exp] 43 / 7e-05 AT2G26280 701 / 0.0 CTC-interacting domain 7 (.1) Lus10038081 [exp] 43 / 7e-05 AT2G26280 693 / 0.0 CTC-interacting domain 7 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G246600.1 pacid=42768090 polypeptide=Potri.006G246600.1.p locus=Potri.006G246600 ID=Potri.006G246600.1.v4.1 annot-version=v4.1 ATGAAGCCCGGAGGATTCTCTACTTTGAACCCATATGCAGCAGCGTATATTCCTCTTTCTAAAAGGGATTCAGCTGATAGAATTGAAAATCCGGGATGGA CTGTGCAGGGTGGGAATCCAAATGTGTGGTATGGGTCTGCCAAGCATAATGCACAGATTAGGCAAAATGATAAAGGACCGATTTCTGTTCCTGAAATGTC TATGCTGAAGAGTCAGTCTGGGTATGGTTCTTATGGCTCGTCATCACAGAATTCATATGAGATGACAGGGAAGCAGAATGTGGATGAAGAATTTGAAATG GACTTGGAATATCTTCGGATCAATTTTCCTGGCATATCTGATGAGTCCCTCACTGGTGTCTATATGGCTAACAAAGGTGACATAGATGCTGCTATTGACA TGTTAAACCAACTTGAGTTTGACACTATTGAGTCTTCTGGAAACCTTCCAGACACCTTGGATATTGGGGATGTTTATGAACCCAGGCCTTCAGCTGAGGC TTCATCTGTGAAACCGAAGACTGTTGTGGATGAAGCCAGTGCCTCATCTGGCTCCTCGGCCCCAGACACAGCGGTTGCCACCTGA
AA sequence Show only first row Show all	>Potri.006G246600.1 pacid=42768090 polypeptide=Potri.006G246600.1.p locus=Potri.006G246600 ID=Potri.006G246600.1.v4.1 annot-version=v4.1 MKPGGFSTLNPYAAAYIPLSKRDSADRIENPGWTVQGGNPNVWYGSAKHNAQIRQNDKGPISVPEMSMLKSQSGYGSYGSSSQNSYEMTGKQNVDEEFEM DLEYLRINFPGISDESLTGVYMANKGDIDAAIDMLNQLEFDTIESSGNLPDTLDIGDVYEPRPSAEASSVKPKTVVDEASASSGSSAPDTAVAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11440		CID5, IPD1	INCREASED POLYPLOIDY LEVEL IN ...		Potri.006G246600 [exp]	0	1
AT1G36980			unknown protein		Potri.005G171901 [exp]	2.44	0.8207
AT1G51200			A20/AN1-like zinc finger famil...		Potri.006G056500 [exp]	3.31	0.8731
AT5G17290		ATG5, APG5, ATA...	AUTOPHAGY 5, autophagy protein...		Potri.017G139700 [exp]	6.32	0.7990
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.012G103100 [exp]	7.21	0.8628
AT2G33120		ATVAMP722, SAR1	ARABIDOPSIS THALIANA VESICLE-A...		Potri.012G119600 [exp]	9.79	0.8506
AT2G30942			Protein of unknown function (D...		Potri.001G000400 [exp]	10.48	0.8109
AT5G50230			Transducin/WD40 repeat-like su...		Potri.015G087200 [exp]	10.58	0.8023
AT2G40110			Yippee family putative zinc-bi...		Potri.010G190000 [exp]	10.95	0.8093
AT3G59490			unknown protein		Potri.017G028900 [exp]	11.66	0.8175
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	12.64	0.8316	VTI12.2

Compare expression of checked genes

Potri.006G246600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.