Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) AT2G20560 324 / 4e-110 DNAJ heat shock family protein (.1) AT1G59725 323 / 9e-110 DNAJ heat shock family protein (.1) AT1G10350 319 / 3e-108 DNAJ heat shock family protein (.1) AT3G08910 318 / 6e-108 DNAJ heat shock family protein (.1) AT4G28480 318 / 1e-107 DNAJ heat shock family protein (.1.2) AT5G01390 311 / 3e-105 DNAJ heat shock family protein (.1.2.3.4) AT3G47940 303 / 8e-102 DNAJ heat shock family protein (.1) AT2G20550 222 / 8e-71 HSP40/DnaJ peptide-binding protein (.1.2) AT1G44160 170 / 5e-50 HSP40/DnaJ peptide-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034600 [exp] 481 / 3e-172 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 341 / 1e-116 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.017G016000 [exp] 336 / 1e-114 AT2G20560 419 / 4e-147 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 333 / 7e-114 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 334 / 8e-114 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1) Potri.017G016100 [exp] 333 / 1e-113 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 318 / 4e-108 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.015G066100 [exp] 316 / 5e-107 AT3G47940 436 / 5e-154 DNAJ heat shock family protein (.1) Potri.008G194000 [exp] 314 / 2e-106 AT1G10350 402 / 4e-141 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021961 [exp] 384 / 1e-133 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10041254 [exp] 382 / 4e-133 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10008109 [exp] 376 / 2e-123 AT5G25530 401 / 1e-132 DNAJ heat shock family protein (.1) Lus10013981 [exp] 332 / 3e-113 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10015402 [exp] 331 / 9e-113 AT2G20560 483 / 7e-173 DNAJ heat shock family protein (.1) Lus10017687 [exp] 325 / 1e-110 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 318 / 1e-107 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 318 / 2e-107 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10030803 [exp] 314 / 2e-106 AT1G10350 434 / 2e-153 DNAJ heat shock family protein (.1) Lus10013280 [exp] 310 / 9e-104 AT1G10350 422 / 5e-148 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G246700.1 pacid=42770480 polypeptide=Potri.006G246700.1.p locus=Potri.006G246700 ID=Potri.006G246700.1.v4.1 annot-version=v4.1 ATGGGGGTTGATTACTATAACATATTGAAGGTTAACAGGAATGCAACAGATGATGATCTAAAGAAGGCATATAGAAGATTGGCAATGAAATGGCATCCTG ATAAGAACCCCACTACCAAGAAAGAAGCTGAAGCCAAATTCAAGGAGATCTCCGAGGCTTATGAGGTCTTGAGTGACCCACAAAAAAGAGAAATTTATGA CCAGTGTGGTGAAGAAGGATTAAAAGACGCACCACCATCTGGCGGTGGTGGCTTCCCTTTCGGAAATGGTAGTGGTGGTGGGTCAAATGGTTTCAATCCT AGGAAGGCAGAGGATATCTTTGCAGAAATCTTTGGAAGCAGTCCTTTTGGATTTGGATCAACAGGACCTGGTAAATCCATGAGGTTCCAGTCGGATGGAG GGTTGTTTGGTGGATTTAGCAGTAGTGATACTCCTTTTCGAACATTCAGTGAGGGGACCGCGCCAAGGAAACCACCACCAGTAGAGAGCAAATTGCCTTG CAGCCTCGAGGAGCTGTATACTGGATCAACAAGGAAAATGAAGATATCAAGAACTGTAGTTGATGCCCATGGGCGACAAGTGCAAGAAACAGAGATATTA ACCATTGATGTGAAGCCAGGGTGGAAGAAGGGAACAAAGATTACATTCCCAGATAAAGGAAATGAACGGCAGAATCAGCTTCCAGCAGATCTTGTGTTTA TAATTGATGAGAAACCTCAGACCACATACAAGAGAGATGGAAATGATCTTACTATCAACCATAAGGTGACCCTAGCCGAAGCACTAGGAGGGACAACAGT AAACCTCACCACACTTGACAGCCGGAATCTATCAATTCCTGTACATGATATAGTGAGCCCTGGCTATGAGCTTGTTGTGGCCATGGAAGGTATGCCAATA GCAAAGGAGCCAGGTAATTGGGGCGATTTGAGGATCAAATTTGAAGTGAAGTTCCCAACAAGATTAGCACCAGAACAACGAGCAGGACTCAAGCGTGTAT TAGGGGGTTAA
AA sequence Show only first row Show all	>Potri.006G246700.1 pacid=42770480 polypeptide=Potri.006G246700.1.p locus=Potri.006G246700 ID=Potri.006G246700.1.v4.1 annot-version=v4.1 MGVDYYNILKVNRNATDDDLKKAYRRLAMKWHPDKNPTTKKEAEAKFKEISEAYEVLSDPQKREIYDQCGEEGLKDAPPSGGGGFPFGNGSGGGSNGFNP RKAEDIFAEIFGSSPFGFGSTGPGKSMRFQSDGGLFGGFSSSDTPFRTFSEGTAPRKPPPVESKLPCSLEELYTGSTRKMKISRTVVDAHGRQVQETEIL TIDVKPGWKKGTKITFPDKGNERQNQLPADLVFIIDEKPQTTYKRDGNDLTINHKVTLAEALGGTTVNLTTLDSRNLSIPVHDIVSPGYELVVAMEGMPI AKEPGNWGDLRIKFEVKFPTRLAPEQRAGLKRVLGG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25530			DNAJ heat shock family protein...		Potri.006G246700 [exp]	0	1
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.012G129700 [exp]	2.82	0.8548	YLS7.2
AT1G29790			S-adenosyl-L-methionine-depend...		Potri.001G352700 [exp]	12.72	0.8491
AT5G02030	HD	PNY, BLR, BLH9,...	VAAMANA, REPLUMLESS, PENNYWISE...		Potri.008G061000 [exp]	15.00	0.8442
AT4G32350			Regulator of Vps4 activity in ...		Potri.018G079500 [exp]	15.36	0.7671
AT1G15760			Sterile alpha motif (SAM) doma...		Potri.001G204600 [exp]	16.73	0.8305
AT2G02170			Remorin family protein (.1.2)		Potri.010G098000 [exp]	25.37	0.8068
AT3G61650		TUBG1	gamma-tubulin (.1)		Potri.014G094900 [exp]	29.93	0.8026	Pt-TUBG1.1,TUBG1
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G131500 [exp]	38.65	0.7753
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Potri.014G051800 [exp]	39.68	0.8137	ARAC9.1
AT5G08350			GRAM domain-containing protein...		Potri.005G088700 [exp]	41.89	0.7963

Compare expression of checked genes

Potri.006G246700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.