Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25520 536 / 8e-174 SPOC domain / Transcription elongation factor S-II protein (.1.2) AT2G25640 498 / 4e-162 SPOC domain / Transcription elongation factor S-II protein (.1) AT5G11430 499 / 7e-161 SPOC domain / Transcription elongation factor S-II protein (.1) AT3G29639 79 / 3e-16 unknown protein AT2G38560 63 / 5e-10 RDO2, TFIIS REDUCED DORMANCY 2, transcript elongation factor IIS (.1) AT2G42730 59 / 1e-08 F-box family protein (.1.2) AT4G18720 57 / 1e-08 Transcription factor IIS protein (.1) AT5G42325 45 / 0.0002 Transcription factor IIS protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034500 [exp] 1616 / 0 AT5G25520 513 / 1e-164 SPOC domain / Transcription elongation factor S-II protein (.1.2) Potri.T125307 [exp] 139 / 1e-33 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.018G125500 [exp] 139 / 1e-33 AT2G25640 131 / 1e-31 SPOC domain / Transcription elongation factor S-II protein (.1) Potri.016G138100 [exp] 64 / 2e-10 AT2G38560 402 / 3e-140 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Potri.006G109300 [exp] 64 / 3e-10 AT2G38560 393 / 2e-136 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008108 [exp] 783 / 0 AT5G11430 559 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10013146 [exp] 781 / 0 AT5G11430 550 / 0.0 SPOC domain / Transcription elongation factor S-II protein (.1) Lus10025131 [exp] 69 / 8e-12 AT2G38560 387 / 6e-134 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10025215 [exp] 66 / 5e-11 AT2G38560 384 / 8e-133 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10022735 [exp] 64 / 2e-10 AT2G38560 375 / 2e-129 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10014178 [exp] 64 / 3e-10 AT2G38560 384 / 1e-132 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10034247 [exp] 55 / 2e-07 AT2G38560 295 / 1e-98 REDUCED DORMANCY 2, transcript elongation factor IIS (.1) Lus10029016 [exp] 44 / 0.0002 AT2G38560 131 / 1e-36 REDUCED DORMANCY 2, transcript elongation factor IIS (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07500 [poplar] [flax] TFIIS_M Transcription factor S-II (TFIIS), central domain CL0616 [poplar] [flax] SPOC PF07744 [poplar] [flax] SPOC SPOC domain
Representative CDS sequence Show only first row Show all	>Potri.006G246800.2 pacid=42769711 polypeptide=Potri.006G246800.2.p locus=Potri.006G246800 ID=Potri.006G246800.2.v4.1 annot-version=v4.1 ATGTCCAACAATCTAGTATCACAGCAATTATCAGTACAGAGCATCCAAATGGGTCAGCTGGAACACATTTCAAACAAGTTGGACTCATCAATGCAAATGG GGTTGATGGAATCCAGAATACATGATCCTGCATTACAACAGATGTCCATGCCGGACATGCAAATGGGACGGATGGGACCGGGACAAAGTTCAACTGACGC ACTATCACAGCAGATGTCAATATCAAGCAACCAAGTACAGTTGTCAGAACCTTTGTGTAATAACAATGTTTTGAAGAATTTCTCTGTACCAAATATGCAA ACAAGACATATGGAACCACGCGCGTACAATTTGATACCTGAGAAATTCTTACCTAAGAGGCAACTGGGAGACATGGATACCATGTTCCATTCTTCTGGAT CACAGCAGCCATCACTATTGAGCAAGCGAAAGGCCCCAATGGAACCTTCATCCAACAATTCTATGTCACAGAAGTTATCAATGCCTCCCAAGCGGGTAGC GCAAATGGAACATAGGCCGTGGTTGATGCCAACTCCAGCACCAAATACTTCTGGGACAAATCGTCCTCAAGCACCATCTAAGAGGCCAGCTTCTAGTAAA GCTGGATCACAGCAATCACCTGTTCAGAAAAATCAAACTGGACAGATGCTGCCATTTTCAAGGGCTCGCAATGAGACTGATTCTGTGAGGTCCAAGCTAA GGCAATCACTAGCAGATGCACTGGCTCTGGTTTCTCAACAGAAGGATAAAACTTTAAGTTCTGGAAAGAACTCTGAAGGTGAGGCTGCAAGTGCTCAAGC ACAGAAACACGAAGAGACTCAACCTATGGTACAAACTCCTGGTGCTGCTGGTACTGTTGACCATATGTCTGATGAGCCCGAGGAATCCTTGCCCACAAAG GACGATTCTTTTACCCAAAACCATTCTGATGGCCCAAAGACATCTCAGGAAACTTCGAACACTAATGGAAATGCTGGTTATTCAACACAGACCTCAAACC ATGATGGACAGGGATTACAATCCAGTGTCATTTTCCGTGATGAAGATGTTTCATTTAGTGACAGCTTTTTTGTAAAAGATGATTTGTTGCAGGGAAATGG ATTGTCCTGGGTATTGGAACCTGATGCAGAGATGGCAGAGAAAAAGGAGTTTGAAACTGCTGAAACACAGCAAGGCCAGAAGCATATCAGCAAAGATATT GGAAAACTAATCCAGGATCCCCAATTTTTGGCTTCTGAAATTGAAGCAGAACTCTTCAAGTTATTTGGAGGAGTGAACAAGAAGTACAAGGAGAAGGGCA GGTCTCTATTGTTCAATTTGAAGGATCGTAGTAATCCGGAACTGAGAGAAAAAGTTATGTCAGGAGAGATTACTCCAGGGCGGCTCTGCTCTATGACCGC GGAGGAACTTGCATCCAAGGAGCTTTCAGAATGGCGGATGGCAAAAGCAGAGGAGCTTGCTCAAATGGTGGTTTTGCCTGATTCAGATGTTGATATCAGA CGTTTGGTGAAGAAAACTCACAAAGGTGAGTTTCAAGTTGAAGTTGAACAAGATAGTGTCACAATGGAGGTTGCTGTTGGGACAAGTTCATTTACTCAGA CGCCACCAAAATCAGAAGAGAAGGAAGCCTCTCCGCTTTCCAAATCTGATCAAATGAAAGACAAAGTGAATGCTGCTGATGACAAGAGAAATTTAGAAGA CAAGAAGGGTTCATATACGCTTACAATTCCTTCGAGTGAAGGGACCGATTTGATGCAAGGACTTATGGTGGATGATGTATTGAAGGATGCGGACTTTCTT CCTCCAATTGTCTCTCTAGATGAATTCATGGAATCCCTTGATTCTGAACCACCATTTGAAAATTTACCCTTGGATGCGGGAAAAGCAACACCCAGCTCCA ACAATGATGACTCACAGGATGTGTCAGAAGCTAAGTCTCCTGCTGCAACTGCAAAGGATCTGGTTGGCAGCACTGCAGAAAAATCTGATAATGTCGAGGT AACTAACACATCACCTGAAGCTAATGGGAAATCCGTCAACATTCATGTAGAATCAGAAACGACACCCTCTGTTGGTGTATCGAAGGGGGAACATGTCTGG GAAGGCTTACTTCAGCTGAGTATTTCCATCATGGCCTCGGTTATTGGCATCTTTAAAAGTGGTGACAAAACATCTGCGAAAGAGTGGTCTGGCTTCGTTG AGGTCAAAGGGAGAGTCAGACTTGATGCATTTGAGAAGTTCCTCCAGGAGCTTCCGATGTCACGAAGTCGTGCTGTTATGGTCGTGCACTTCGTTTGCAA GGAGGGGTCCACGGAAAGTGAGAGGGAAAGTCTTAGAGAGGTGGCGGATTCCTATGTTTTGGATGAGAGAGTGGGTTTTGCTGAGCCTGCTCATGGAGTG GAACTTTATTTATGCCCACCTCATTTAAAGACACGTGAAAGGCTCATCAAGGTCCTCCCAAAGGACCAACTTGAGGCCCTTAATGCTGTTGATAATGGTC TAATTGGTGTTATTGTATGGAGAAAAGCTCAAATAACGTCAACAATATCACCTACCTCTGCATCACACCATAAACACAGCTCAAAAAAGCAACAACACTT CACTTCTAGGAAGCACCAAGAAAAGGACACTAATATGAATGTGAATATTGCATCAAAACATCCCCTGCCTCCTCGTAGCGGAGCCTATCCCAACCCCCAA CCTGATGAAGACGATGATGATGTGCCTCCTGGGTTTGGCCCACCGGCTGGCCGGGATGAGGATGATTTACCTGAGTTCAACTTTTCTAGTAACTCTATGG CATCAAGGTCGCAGTTTTCAAACCAAAATCCTACTAGGGGATCGGGAATGCCCCCTCTCAATTCACCATATCCCCAGACCCCATCTCGTCCCGTAGATTT GAGGGAGCTTGTTCACAGATATGGCCAACCTAAAACTAATGTTCCACCAATGCAGCCATGGAATGATGATGACGATGACGATGATGATATGCCAGAGTGG CACCCTGAAGAAACCCAACATCATCGTACACACCCTCAGTCAACCCATGTGCATGGTGTGCAGCAGCCTGTTCTAAGAGCCCACATGGCGCAGCAAACGG CACATCAGACAATGGCACCATTAGGAACATCTCCAGCCATGCCTCAAGTGAATATGATGCATAGTCAACAAAATCTTGCCCCCTCTTTGCAGCAAGGCGC CTGGGTGGCTCCTCAGCCTGTTCCCCATGGCCATCCTGCTTATCAATCTAGTGGAGGGCAAGCGTATGGTTCACCCGGGCAGGCTTGGCGCAGAGATGCC CCTAAAAGTAGAGGCTTTTGA
AA sequence Show only first row Show all	>Potri.006G246800.2 pacid=42769711 polypeptide=Potri.006G246800.2.p locus=Potri.006G246800 ID=Potri.006G246800.2.v4.1 annot-version=v4.1 MSNNLVSQQLSVQSIQMGQLEHISNKLDSSMQMGLMESRIHDPALQQMSMPDMQMGRMGPGQSSTDALSQQMSISSNQVQLSEPLCNNNVLKNFSVPNMQ TRHMEPRAYNLIPEKFLPKRQLGDMDTMFHSSGSQQPSLLSKRKAPMEPSSNNSMSQKLSMPPKRVAQMEHRPWLMPTPAPNTSGTNRPQAPSKRPASSK AGSQQSPVQKNQTGQMLPFSRARNETDSVRSKLRQSLADALALVSQQKDKTLSSGKNSEGEAASAQAQKHEETQPMVQTPGAAGTVDHMSDEPEESLPTK DDSFTQNHSDGPKTSQETSNTNGNAGYSTQTSNHDGQGLQSSVIFRDEDVSFSDSFFVKDDLLQGNGLSWVLEPDAEMAEKKEFETAETQQGQKHISKDI GKLIQDPQFLASEIEAELFKLFGGVNKKYKEKGRSLLFNLKDRSNPELREKVMSGEITPGRLCSMTAEELASKELSEWRMAKAEELAQMVVLPDSDVDIR RLVKKTHKGEFQVEVEQDSVTMEVAVGTSSFTQTPPKSEEKEASPLSKSDQMKDKVNAADDKRNLEDKKGSYTLTIPSSEGTDLMQGLMVDDVLKDADFL PPIVSLDEFMESLDSEPPFENLPLDAGKATPSSNNDDSQDVSEAKSPAATAKDLVGSTAEKSDNVEVTNTSPEANGKSVNIHVESETTPSVGVSKGEHVW EGLLQLSISIMASVIGIFKSGDKTSAKEWSGFVEVKGRVRLDAFEKFLQELPMSRSRAVMVVHFVCKEGSTESERESLREVADSYVLDERVGFAEPAHGV ELYLCPPHLKTRERLIKVLPKDQLEALNAVDNGLIGVIVWRKAQITSTISPTSASHHKHSSKKQQHFTSRKHQEKDTNMNVNIASKHPLPPRSGAYPNPQ PDEDDDDVPPGFGPPAGRDEDDLPEFNFSSNSMASRSQFSNQNPTRGSGMPPLNSPYPQTPSRPVDLRELVHRYGQPKTNVPPMQPWNDDDDDDDDMPEW HPEETQHHRTHPQSTHVHGVQQPVLRAHMAQQTAHQTMAPLGTSPAMPQVNMMHSQQNLAPSLQQGAWVAPQPVPHGHPAYQSSGGQAYGSPGQAWRRDA PKSRGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25520			SPOC domain / Transcription el...		Potri.006G246800 [exp]	0	1
AT1G79090			unknown protein		Potri.011G143900 [exp]	1.41	0.9204
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Potri.013G018700 [exp]	2.00	0.9274
AT5G13950			unknown protein		Potri.002G237800 [exp]	2.82	0.9128
AT5G56290		EMB2790, PEX5, ...	EMBRYO DEFECTIVE 2790, ARABIDO...		Potri.011G170000 [exp]	5.38	0.8760	Pt-PEX5.1
AT2G32910			DCD (Development and Cell Deat...		Potri.005G043100 [exp]	6.00	0.8853
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Potri.014G128300 [exp]	6.32	0.9126
AT1G48110		ECT7	evolutionarily conserved C-ter...		Potri.010G152300 [exp]	7.41	0.8901
AT1G50620			RING/FYVE/PHD zinc finger supe...		Potri.001G358900 [exp]	8.24	0.8858
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.004G209000 [exp]	10.67	0.8991
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.019G036800 [exp]	10.90	0.8966

Compare expression of checked genes

Potri.006G246800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.