Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32600 498 / 2e-175 RING/U-box superfamily protein (.1) AT1G80400 410 / 2e-141 RING/U-box superfamily protein (.1) AT4G26580 165 / 3e-47 RING/U-box superfamily protein (.1.2) AT5G55970 163 / 2e-46 RING/U-box superfamily protein (.1.2) AT3G61180 157 / 7e-44 RING/U-box superfamily protein (.1) AT1G68070 143 / 8e-39 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G11680 143 / 2e-38 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 137 / 9e-37 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT2G01735 133 / 3e-35 RIE1 RING-finger protein for embryogenesis (.1) AT1G63170 129 / 2e-33 Zinc finger, C3HC4 type (RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034400 [exp] 686 / 0 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 166 / 1e-47 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.011G094800 [exp] 162 / 4e-46 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.014G075000 [exp] 161 / 3e-45 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 157 / 3e-44 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.002G155200 [exp] 152 / 7e-42 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.003G123300 [exp] 139 / 8e-37 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.010G106300 [exp] 135 / 5e-36 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G243200 [exp] 65 / 3e-12 AT5G06490 138 / 2e-41 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013144 [exp] 519 / 0 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10011475 [exp] 440 / 5e-153 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10008106 [exp] 436 / 5e-152 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10023112 [exp] 421 / 4e-145 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1) Lus10017750 [exp] 182 / 6e-54 AT4G32600 192 / 1e-57 RING/U-box superfamily protein (.1) Lus10033075 [exp] 161 / 8e-46 AT4G32600 189 / 2e-56 RING/U-box superfamily protein (.1) Lus10022567 [exp] 156 / 2e-43 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10041359 [exp] 150 / 3e-41 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10034587 [exp] 141 / 1e-36 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10036569 [exp] 136 / 8e-36 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.006G247000.1 pacid=42770404 polypeptide=Potri.006G247000.1.p locus=Potri.006G247000 ID=Potri.006G247000.1.v4.1 annot-version=v4.1 ATGGATGTTCCCTCAACGGAACTACATTCTGAAAGTCAGACTGACACTTTCCCATTGTTAATGGAGCGGCCAGAGAATCTTAACAGTAGTGCGCATATTA TTGACATACCAAGAAACATCGAGGTTCCTGGGTCACCATCTCATGATAGAATTTCAAGTGGATTGGAAGCATCATCACATGAGGACAGACCTTCGAGTGG TGTGAGAGCACCCAGTACTCAGCCTTCAACATCTTTGTCTAATGGAACAAACTCTCGGAGCTCCTCATTAATAAGGAGAGGAGAAGCTCGTCGACGCAGG AGTCCCTTGAACTCGGGTTTATGGATTTCTGTTGAATTAGTTCTCACGCTGAGCCAGATTGTTGCGTCTATTGTTGTTTTGTCTGTGTCGAGACATGAAC ATCCACATGCACCATTGTTTGCATGGATTGTTGGTTATGCATCAGGATGTGTTGCAACCCTGCCACTTCTTTACTGGCGCTATCGTTATCGTAACCAGTC TTTGGAGCAAGACTCAGCCCAAAATCATCAGGGTTCTGCACATATTAATGTTCCTGCAGGACCATTTTCTCTTTCAGTCAGTAGGAATTCAGAAAGCGAT GATCGCCGATCTGCCACTACATCACCTAGAGGCAGCCAAAATGCAGTACTAAATGCAAGACTCAAGGTTTTGGTGGAATACTTCAAAATGGCTTTGGATT GCTTTTTCGCAGTTTGGTTTGTGGTGGGCAATGTGTGGATATTTGGAGGCCACTCATCTGCTGAGGAGGCTCCAAACTTGTACAGGTTATGTATAGTGTT TCTTACATTTAGCTGTATCGGATACGCTATGCCCTTCATTCTGTGTGCAACAATCTGCTGTTGCTTGCCTTGTATAATTTCCGTTCTTGGATATAGAGAG GATCTGACACAGACAAGGGGAGCCACAACTGAATCAATTGATGCCTTGCCAACATACAAGTTTAAGTTAATTAAAAATAGAAATGGTGAGGATAGCAGTG CAGGAGCTAGTGATGGTGGGGTCGTGGCTGCAGGAACAGAAAAGGAACGAGTGATCTCGGGAGAAGATGCAGTTTGCTGCATTTGTTTGGCAAAATTTGC AAACAATGACGAGCTGAGGGAGCTGCCATGTTCTCATTTCTTTCACAAGGAGTGTGTAGATAAGTGGCTGAAGATCAATGCATCATGTCCTCTTTGCAAG AGTGAGGTCGGTGAAAGTCTTTTAGGTTCTCTCTCTGGGTTAAGTTCTAGCCAGAGACGGGTCGAAAACGGGGCTGGTGCAGTGTTTTGA
AA sequence Show only first row Show all	>Potri.006G247000.1 pacid=42770404 polypeptide=Potri.006G247000.1.p locus=Potri.006G247000 ID=Potri.006G247000.1.v4.1 annot-version=v4.1 MDVPSTELHSESQTDTFPLLMERPENLNSSAHIIDIPRNIEVPGSPSHDRISSGLEASSHEDRPSSGVRAPSTQPSTSLSNGTNSRSSSLIRRGEARRRR SPLNSGLWISVELVLTLSQIVASIVVLSVSRHEHPHAPLFAWIVGYASGCVATLPLLYWRYRYRNQSLEQDSAQNHQGSAHINVPAGPFSLSVSRNSESD DRRSATTSPRGSQNAVLNARLKVLVEYFKMALDCFFAVWFVVGNVWIFGGHSSAEEAPNLYRLCIVFLTFSCIGYAMPFILCATICCCLPCIISVLGYRE DLTQTRGATTESIDALPTYKFKLIKNRNGEDSSAGASDGGVVAAGTEKERVISGEDAVCCICLAKFANNDELRELPCSHFFHKECVDKWLKINASCPLCK SEVGESLLGSLSGLSSSQRRVENGAGAVF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32600			RING/U-box superfamily protein...		Potri.006G247000 [exp]	0	1
AT2G44140			Peptidase family C54 protein (...		Potri.007G147100 [exp]	3.00	0.8116
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.006G135800 [exp]	3.60	0.8179
AT2G25740			ATP-dependent protease La (LON...		Potri.018G046700 [exp]	3.74	0.7603
AT1G78420			RING/U-box superfamily protein...		Potri.001G378000 [exp]	13.26	0.7655
AT4G27650		PEL1	PELOTA, Eukaryotic release fac...		Potri.005G204500 [exp]	15.16	0.7504	PEL1.2
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.004G062500 [exp]	15.42	0.7995
AT1G29800			RING/FYVE/PHD-type zinc finger...		Potri.011G071900 [exp]	16.12	0.7467
AT3G13340			Transducin/WD40 repeat-like su...		Potri.002G233700 [exp]	20.27	0.6954
AT2G30880			Pleckstrin homology (PH) domai...		Potri.005G205300 [exp]	21.97	0.6888
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.008G106300 [exp]	31.36	0.7494

Compare expression of checked genes

Potri.006G247000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.