Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11300 494 / 3e-173 CYC2BAT, CYCA2;2, CYC3B CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) AT5G25380 484 / 4e-169 CYCA2;1 cyclin a2;1 (.1) AT1G80370 441 / 5e-152 CYCA2;4 Cyclin A2;4 (.1) AT1G15570 404 / 1e-137 CYCA2;3 CYCLIN A2;3 (.1) AT1G44110 332 / 2e-109 CYCA1;1 Cyclin A1;1 (.1) AT5G43080 311 / 1e-102 CYCA3;1 Cyclin A3;1 (.1) AT1G77390 304 / 1e-98 TAM, DYP, CYCA1;2 TARDY ASYNCHRONOUS MEIOSIS, CYCLIN A1;2 (.1) AT1G47210 296 / 2e-96 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT1G47230 286 / 1e-92 CYCA3;4 CYCLIN A3;4 (.1.2) AT1G47220 277 / 1e-89 CYCA3;3 Cyclin A3;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G034100 [exp] 865 / 0 AT5G11300 498 / 1e-174 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Potri.001G177100 [exp] 496 / 4e-173 AT1G80370 483 / 2e-168 Cyclin A2;4 (.1) Potri.003G058200 [exp] 470 / 5e-163 AT1G80370 494 / 9e-173 Cyclin A2;4 (.1) Potri.002G080000 [exp] 327 / 7e-107 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.005G181400 [exp] 324 / 1e-105 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.014G021100 [exp] 318 / 2e-105 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G121500 [exp] 313 / 5e-103 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.009G093100 [exp] 276 / 2e-88 AT5G43080 288 / 9e-95 Cyclin A3;1 (.1) Potri.002G010000 [exp] 201 / 3e-59 AT1G76310 550 / 0.0 CYCLIN B2;4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008103 [exp] 565 / 0 AT5G11300 465 / 6e-162 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1) Lus10029700 [exp] 329 / 2e-108 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10042739 [exp] 327 / 3e-106 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10028544 [exp] 316 / 2e-103 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10024822 [exp] 304 / 5e-99 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10014199 [exp] 303 / 5e-99 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10018715 [exp] 302 / 3e-98 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10013140 [exp] 262 / 1e-84 AT5G25380 244 / 1e-78 cyclin a2;1 (.1) Lus10013886 [exp] 226 / 1e-69 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10026598 [exp] 199 / 1e-60 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain CL0065 [poplar] [flax] Cyclin PF02984 [poplar] [flax] Cyclin_C Cyclin, C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.006G247200.1 pacid=42766932 polypeptide=Potri.006G247200.1.p locus=Potri.006G247200 ID=Potri.006G247200.1.v4.1 annot-version=v4.1 ATGAACAAAGAAAATGCAACTACTGCCAAACTTGAAGAGCCCGCTACTCGAATTACACGGGCACGTGCTAAAGCCTTGGGGGCTTCGGTAGGAATATATC CTGCCTCAAAACCCTCCTTCAAGCAGGAGCAGAGGCATCCTCTTAGAGCAAAGACCAAAAGAGCAGCATCAGATGAGAATAAATCTGCTTCGACCTCGAT TGCTGGCTTTAAGCATAAGAGAAGGGCGGTGCTTAAAGATGCGAGCAACATCTTTTGTGAGAATTCTCATCAAAACTGCATCCATGCAACTAAACAATAT ACTAGTAAACTAGCTAGAAAATGTCCTCCGAAAACAAATGCAGAGGTGGCTGCTCGTATCTCTATGAAAATTTCACCGGTTCAGGAGGATGTAAAAGAAA AGTTAGCTGAAGAGCTGTCAAAAATAAGAATGGGAGAAGCACAAAATTTTACTTCACCAGCAAAGTTAGAGGTAAAACAAGATAGTTTGTGTCATGGCAC AGGAGAAGGTGGTGTAGCAGATCCGATGCTTCTAATACCAGTTTCCACAAAATTTTCTGGAGTTGAAAGCCCTCTAAAGAAAGAAGTAAACGAGATTTCA AAAAAACTGGATGCCTCAAGTGGTGCGAGCGTAGTGGATATTGATTTAAACATAAAAGACCCTCAGTTCTGCAGCTTGTATGCCCCTCATATATATAACA ATATACGTGTGAAGGAGCTTGACCTAAGACCTTCAGTTGATTACATGGAAAAGTTGCAGCGCGATATCAGTCCAGGAATGCGAGGAATTCTGATTGACTG GCTTGTGGAGGTTTCTGAAGAATATACGTTGGTTCCAGATACTCTTTACCTCACTGTCAATCTCATTGATCGATTCCTCTCACAGAACTATATTGAAAAA CAAAGACTCCAACTGCTTGGTGTTACTTGCATGTTAATTGCCTCTAAGTATGAAGAAATTATTCCGCCAAGAGTGGAAGGGTTTTGCTTCATCACTGACA ATACTTACACAAGAGGAGAGGTTCTGAAAATGGAGAGTCAGGTCCTGAATTTCTTGTACTTTCAGTTATCAGTTCCTACCACGAAAACATTCCTGAGGAG ATTCATTCAAGCAGCACAAGCTTCTTGCAAGGTTCCTTGTGTCGAACTGGTGTTCTTGGCAAATTATTTGGCAGAGTTGACTCTTGTTGAGTACAACTTC CTAAAGTTCTTACCTTCCCTCATAGCTGCATCCGCTGTTTTTCTTGCCCGATGGACACTCAATCAGTCAGATCATCCATGGAACTCAACTCTTGAGCACT ACACTAGATACACAGCATCAGAACTGAAAACTACAGTACTTTCTCTGGAAGATTTGCAGCTGAACACCAATGGTTGTTGCCTAAATGCTATACGCGACAA ATATAGACAACAGAAGTTCAAATCTGTAGCAACATTGACCTCAGTGCGACGAGTTTCATCGCTTTTCTGA
AA sequence Show only first row Show all	>Potri.006G247200.1 pacid=42766932 polypeptide=Potri.006G247200.1.p locus=Potri.006G247200 ID=Potri.006G247200.1.v4.1 annot-version=v4.1 MNKENATTAKLEEPATRITRARAKALGASVGIYPASKPSFKQEQRHPLRAKTKRAASDENKSASTSIAGFKHKRRAVLKDASNIFCENSHQNCIHATKQY TSKLARKCPPKTNAEVAARISMKISPVQEDVKEKLAEELSKIRMGEAQNFTSPAKLEVKQDSLCHGTGEGGVADPMLLIPVSTKFSGVESPLKKEVNEIS KKLDASSGASVVDIDLNIKDPQFCSLYAPHIYNNIRVKELDLRPSVDYMEKLQRDISPGMRGILIDWLVEVSEEYTLVPDTLYLTVNLIDRFLSQNYIEK QRLQLLGVTCMLIASKYEEIIPPRVEGFCFITDNTYTRGEVLKMESQVLNFLYFQLSVPTTKTFLRRFIQAAQASCKVPCVELVFLANYLAELTLVEYNF LKFLPSLIAASAVFLARWTLNQSDHPWNSTLEHYTRYTASELKTTVLSLEDLQLNTNGCCLNAIRDKYRQQKFKSVATLTSVRRVSSLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.006G247200 [exp]	0	1
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.009G050700 [exp]	3.46	0.8529
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	4.35	0.8700	ALC.2
AT2G43990			unknown protein		Potri.007G145400 [exp]	5.29	0.8419
AT1G54510		ATNEK1	NIMA-related serine/threonine ...		Potri.013G039000 [exp]	7.48	0.8308
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	8.94	0.8179
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.004G054900 [exp]	10.19	0.8004
AT4G19710		AK-HSDHII, AK-H...	aspartate kinase-homoserine de...		Potri.013G099500 [exp]	10.39	0.8285	HSDH.2
AT1G54385			ARM repeat superfamily protein...		Potri.013G058700 [exp]	10.48	0.8642
AT5G12890			UDP-Glycosyltransferase superf...		Potri.017G077700 [exp]	10.95	0.8046
AT5G04310			Pectin lyase-like superfamily ...		Potri.010G229000 [exp]	11.83	0.8147

Compare expression of checked genes

Potri.006G247200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.