Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11310 639 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 202 / 1e-56 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 190 / 2e-53 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G65820 192 / 5e-53 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 182 / 2e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G20300 181 / 5e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 182 / 6e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 162 / 2e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G38730 162 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 156 / 4e-41 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114700 [exp] 202 / 1e-57 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G181900 [exp] 196 / 1e-55 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G066700 [exp] 193 / 4e-54 AT1G20300 213 / 5e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 189 / 7e-53 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G102700 [exp] 181 / 8e-50 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 177 / 5e-48 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G121400 [exp] 174 / 2e-46 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G074500 [exp] 171 / 1e-45 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G079400 [exp] 168 / 6e-45 AT1G02420 649 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008102 [exp] 785 / 0 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013139 [exp] 756 / 0 AT5G11310 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001633 [exp] 216 / 1e-62 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039021 [exp] 200 / 9e-57 AT3G49730 215 / 5e-62 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 196 / 1e-54 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030603 [exp] 183 / 8e-51 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 179 / 2e-49 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 181 / 4e-49 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011459 [exp] 173 / 7e-47 AT1G20300 711 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 171 / 2e-45 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G247400.1 pacid=42770323 polypeptide=Potri.006G247400.1.p locus=Potri.006G247400 ID=Potri.006G247400.1.v4.1 annot-version=v4.1 ATGAAGTCGTCTCTCATTAACTTCCACAAAAACACAACTCTACTTTATGTATTTTTAACAACCAGAAAACCGCCGCATAACCGCCACTTCTCCGCCGTGT CCTCCGCGGAATCGTGGCTGGCCGTACAAGGAAACCCTCTAATCAAGTGGCCCCACAACCCCAACTTGGCCCCATCCCCATCAGCAGACCAGCAAAACTC CTCTCCAACTTCAAACTCAAACCCTAATTACCATCAAAATGATTTCTTTACCCTCTGCAACATCCTCAAAGACCCCAAAATCCAGCTCGGTCCATCCCTC CGAACCGCTTTGGACCGGACCGGAATTGAACCGGAACTGGGTCTTATACAGTCAGTATTTGACCATTTTGATTCATCACCAAAGTTGCTGCACAGCGTAT TTCTGTGGGCAGAGAAGAAACCTGGGTTTCAATCCTCTGCGGCGTTGTTTAATTCAATGGTGAATTTTCTTGGTAAAGCAAGAGAATTTGGTTCTGCTTG GTGTTTATTGCTTGATAGGATTGGTGGAAATGAAGGAGGGGATTTGGTTTCTAGTGACACTTTTGCCATTTTGATCAGAAGGTATACTAGAGCAGGAATG TCTGAAGCTGCAATTAGAACATTTGAATACGCGAGCAGTTTAGATTTGATTCATAATTCTGAAGCTGGAACGAGCTTGTTTGAAATTTTGTTGGATTCAC TTTGTAAGGAGGGGCATGTTAGGGTGGCTACAGACTATTTTGATAGGAAAGTGGAGAAGGACCCATGCTGGGTTCCATCAGTTCGGATATATAATATACT GTTAAATGGATGGTTTAGATCAAGAAAGCTCAAGCATGCAGAGAGGCTTTGGCTGGAAATGAAGAAGAAGAATGTAAAACCGAGTGTTGTAACATATGGT ACACTGGTAGAAGGGTACAGTCGTATGCGTCGTGTTGAGAGGGCTATTGAATTGGTTGATGAAATGAAAAGAGAAGGGATTAAATCAAATGCCATTGTAT ATAATCCCATTATTGATGCATTAGCAGAAGCTGGTAGGTTTAAGGAGGTCTTGGGGATGATGGAGCACTTTTTTCTGTGTGAGGAAGGCCCCACTATCTC CACCTACAATTCTTTGGTAAAGGGTTACTGTAAGGCTGGAGACCTTGTTGGGGCTAGCAAGATCCTTAAGATGATGATTAGCAGGGAAGTCTTCCCAACC CCTACAACTTATAATTATTTCTTTCGGCATTTTTCAAAGTGTAGGAAAATTGAAGAGGGGATGAACCTATATACCAAGATGATTGAATCTGGGTACACCC CTGATCGACTCACTTACCATCTTTTGTTGAAGATGTTGTGTGAGGAGGAGAGATTGGACTTGGCTGTTCAGATTAGCAAGGAAATGAGAGCTAGGGGATG TGATATGGACTTAGCCACTAGCACCATGTTTACTCATTTGCTTTGTAAAATGCAGAGATTTGAAGAGGCATTTGCAGAATTTGAGGACATGTTACGGAGA GGTATAGTTCCTCAATACCTTACTTTCCATAGATTGAATGATGAGTTCAGGAAACAGGGACTGACTGAGCTGGCACGGAGACTGTGTAAGCTGATGTCTT CTGTTTCACATTCAAAAAACTTGCCAAATACATATAATGTTGATAGAGATGCGTCACGACATGCAAGGAGAAAATCTATATTGCAGAAGGCAGGAGTAAT GTCTGAAATACTAAAGACTTGTAATGATCCTAGAGAACTTGTTAAGCACAGAAGTTCATCTCAGAATCCCGAATCAAGTGCAAATCAGTTGATAGAGGAT ATAAAAAAGAGAGCAAAGACATGA
AA sequence Show only first row Show all	>Potri.006G247400.1 pacid=42770323 polypeptide=Potri.006G247400.1.p locus=Potri.006G247400 ID=Potri.006G247400.1.v4.1 annot-version=v4.1 MKSSLINFHKNTTLLYVFLTTRKPPHNRHFSAVSSAESWLAVQGNPLIKWPHNPNLAPSPSADQQNSSPTSNSNPNYHQNDFFTLCNILKDPKIQLGPSL RTALDRTGIEPELGLIQSVFDHFDSSPKLLHSVFLWAEKKPGFQSSAALFNSMVNFLGKAREFGSAWCLLLDRIGGNEGGDLVSSDTFAILIRRYTRAGM SEAAIRTFEYASSLDLIHNSEAGTSLFEILLDSLCKEGHVRVATDYFDRKVEKDPCWVPSVRIYNILLNGWFRSRKLKHAERLWLEMKKKNVKPSVVTYG TLVEGYSRMRRVERAIELVDEMKREGIKSNAIVYNPIIDALAEAGRFKEVLGMMEHFFLCEEGPTISTYNSLVKGYCKAGDLVGASKILKMMISREVFPT PTTYNYFFRHFSKCRKIEEGMNLYTKMIESGYTPDRLTYHLLLKMLCEEERLDLAVQISKEMRARGCDMDLATSTMFTHLLCKMQRFEEAFAEFEDMLRR GIVPQYLTFHRLNDEFRKQGLTELARRLCKLMSSVSHSKNLPNTYNVDRDASRHARRKSILQKAGVMSEILKTCNDPRELVKHRSSSQNPESSANQLIED IKKRAKT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11310			Pentatricopeptide repeat (PPR)...		Potri.006G247400 [exp]	0	1
AT5G39785			Protein of unknown function (D...		Potri.017G082300 [exp]	1.00	0.8725
AT2G37035			unknown protein		Potri.016G091400 [exp]	2.44	0.8707
AT5G17510			unknown protein		Potri.013G076800 [exp]	4.89	0.8357
AT3G53700		MEE40	maternal effect embryo arrest ...		Potri.017G033000 [exp]	7.54	0.8408
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.003G104400 [exp]	8.48	0.7947
AT1G01840			unknown protein		Potri.014G077000 [exp]	9.59	0.7950
AT3G59670			unknown protein		Potri.005G144800 [exp]	10.19	0.8237
AT3G52220			unknown protein		Potri.008G019100 [exp]	10.48	0.8316
AT5G24870			RING/U-box superfamily protein...		Potri.006G274700 [exp]	11.31	0.8026
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G225000 [exp]	12.24	0.8172

Compare expression of checked genes

Potri.006G247400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.