Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32570 187 / 2e-55 ZIM TIFY8 TIFY domain protein 8 (.1) AT3G17860 49 / 3e-06 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G70700 44 / 0.0001 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G48500 43 / 0.0003 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033700 [exp] 632 / 0 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.015G035800 [exp] 51 / 1e-06 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.012G044900 [exp] 49 / 3e-06 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 46 / 3e-05 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 45 / 6e-05 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.002G048500 [exp] 43 / 0.0003 AT4G14720 95 / 6e-22 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.005G214300 [exp] 42 / 0.0007 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008101 [exp] 284 / 3e-92 AT4G32570 155 / 2e-43 TIFY domain protein 8 (.1) Lus10013138 [exp] 279 / 2e-90 AT4G32570 152 / 2e-42 TIFY domain protein 8 (.1) Lus10013166 [exp] 44 / 9e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10031907 [exp] 45 / 0.0001 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10027648 [exp] 44 / 0.0002 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2) Lus10039911 [exp] 44 / 0.0002 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10008129 [exp] 42 / 0.0005 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06200 [poplar] [flax] tify tify domain
Representative CDS sequence Show only first row Show all	>Potri.006G247500.2 pacid=42769638 polypeptide=Potri.006G247500.2.p locus=Potri.006G247500 ID=Potri.006G247500.2.v4.1 annot-version=v4.1 ATGGCAGTAGTATTGACAATGGCACAACAAAGCAAGAACAACAATGCCAACAGTAGCCATAATAATAGTGTTTATGTAAACAACAGTACTGCAACAAGCC AACAGCAACAAAAACAAGATTTGAAGGCAATGTTTCATGATTTCTTGGGCATGAAAGGAACTACAGATTCACCAGTTGTTTTAGCTCCAAAAAATAAAGA TGGGTCTCCTTCTGCTTCTGCTTCACTTGGAGCTTCTTCTGGTGGTGGCCGTGGACCTCTCTCTTCTACCTCTGATCTAGCTTCTGAAAGGCAGGCTGGA AATCATCTTGAGGGGATTCCATTTTATGGTCCAAGGAGTGATATTTCTGGTCCTGAGATAAGCAACAGATTAGCAGGAAGTAAGCGGAGCAATTCAGATT CTGCCTTTACAGGATCAAGGGATGGGATTCCACAAATGGCTCATGATTCCATCGAGAGCCTGCATTTGATGAAGATGCTAAAAAATGGAGGTGGCAGAGA ACGGCCTAGAAGGTCCAACGATGACGAGGTTTTCTATGGTATGCAGCCAATGAGGCCGAGTTCTGCATCTCTCATACTGCAACCTTCTGCTGGCAGTAGA CTTGATGCCAACGTTTCCAAACAAGATCGATCCATTCCCATGGGGATAGGTGCATATCCTCCGCGTGGCGGTCAATTTGTTCCTTTTACGCATCAAGTTC CCACAAACAGATTCAGAGACACAAATGCTGGTCCTTCAATTGTCTCACAATCTGCTGCCGATGAAGGATCCAGAACTGGAATCAAAGGCCCTGGAATTCT GAGTTCTATAAATGCTGGCAGCGGTATCTCTGAGAAAAATTCATCCAGAGGGCTGCCTAGTGGTGGCAAACCCAAGACTGGGATTCATATTTCAGAGCCA GAATCTTCAAATCCTTCAAGTCGGCAGGGTTTAACATCTGCCAGCCGCCAGATGACTATATTTTATGGTGGTCAAGCTCATGTTTTTGATGATGTTCACC CAAACAAGGCAGATGTTATAATGGCCCTGGCAGGTTCAAACGGAGGATCATGGTCAACAACCTACTCACCAAAACCTACTGCAAGTCAAGGTAGTGAAAG TTACATGACCAGCGGCGGGGAATATGAACTCCGTGGGAGGCTATCCGTCACCGGCAATGCTACCCGGGGAGTTGGCTCTAGTGATCGAATCTCTACACCA ACAGGAGGTCATCATGGCAGCATTGTAATAGCTAAAGAGAGGAGAAACGCAGTTCAGGCAGGCGAACCCAGTAATGAGGAGAAATGA
AA sequence Show only first row Show all	>Potri.006G247500.2 pacid=42769638 polypeptide=Potri.006G247500.2.p locus=Potri.006G247500 ID=Potri.006G247500.2.v4.1 annot-version=v4.1 MAVVLTMAQQSKNNNANSSHNNSVYVNNSTATSQQQQKQDLKAMFHDFLGMKGTTDSPVVLAPKNKDGSPSASASLGASSGGGRGPLSSTSDLASERQAG NHLEGIPFYGPRSDISGPEISNRLAGSKRSNSDSAFTGSRDGIPQMAHDSIESLHLMKMLKNGGGRERPRRSNDDEVFYGMQPMRPSSASLILQPSAGSR LDANVSKQDRSIPMGIGAYPPRGGQFVPFTHQVPTNRFRDTNAGPSIVSQSAADEGSRTGIKGPGILSSINAGSGISEKNSSRGLPSGGKPKTGIHISEP ESSNPSSRQGLTSASRQMTIFYGGQAHVFDDVHPNKADVIMALAGSNGGSWSTTYSPKPTASQGSESYMTSGGEYELRGRLSVTGNATRGVGSSDRISTP TGGHHGSIVIAKERRNAVQAGEPSNEEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32570	ZIM	TIFY8	TIFY domain protein 8 (.1)		Potri.006G247500 [exp]	0	1
AT5G52870		MAKR5	MEMBRANE-ASSOCIATED KINASE REG...		Potri.015G027500 [exp]	2.23	0.7527
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.001G114900 [exp]	6.70	0.7277
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.002G040600 [exp]	7.74	0.6950
AT1G59940		ARR3	response regulator 3 (.1)		Potri.008G193000 [exp]	17.60	0.6703
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Potri.016G043700 [exp]	25.61	0.7168
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.003G051300 [exp]	27.49	0.6866	Pt-PAP2.3
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	29.06	0.6588
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	33.98	0.6555
					Potri.001G135100 [exp]	34.29	0.6890
AT1G20160		ATSBT5.2	Subtilisin-like serine endopep...		Potri.005G243000 [exp]	37.22	0.6743	SSTP.3

Compare expression of checked genes

Potri.006G247500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.