Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-WGA3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15550 328 / 2e-111 ATGA3OX1, GA4 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) AT4G21690 310 / 1e-104 ATGA3OX3 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) AT1G80340 294 / 3e-98 ATGA3OX2, GA4H ARABIDOPSIS THALIANA GIBBERELLIN-3-OXIDASE 2, gibberellin 3-oxidase 2 (.1) AT1G80330 286 / 5e-95 ATGA3OX4 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 4, gibberellin 3-oxidase 4 (.1) AT3G21420 158 / 3e-45 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 158 / 3e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G25420 157 / 1e-44 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G10490 156 / 1e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G55290 156 / 2e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G17010 155 / 3e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033600 [exp] 586 / 0 AT1G15550 328 / 2e-111 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G176600 [exp] 352 / 2e-120 AT1G15550 452 / 1e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.003G057400 [exp] 347 / 2e-118 AT1G15550 451 / 2e-159 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Potri.001G382400 [exp] 162 / 9e-47 AT1G17020 446 / 1e-157 senescence-related gene 1 (.1) Potri.001G007100 [exp] 159 / 9e-46 AT1G55290 496 / 4e-177 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G006901 [exp] 158 / 3e-45 AT3G13610 520 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.019G014454 [exp] 156 / 6e-45 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.009G022800 [exp] 156 / 1e-44 AT1G17020 302 / 6e-101 senescence-related gene 1 (.1) Potri.001G381700 [exp] 156 / 2e-44 AT1G17020 436 / 2e-153 senescence-related gene 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008100 [exp] 352 / 2e-120 AT4G21690 273 / 8e-90 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013135 [exp] 337 / 3e-115 AT1G15550 263 / 4e-86 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10011476 [exp] 330 / 8e-112 AT1G15550 412 / 1e-143 GA REQUIRING 4, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, gibberellin 3-oxidase 1 (.1) Lus10013134 [exp] 311 / 2e-104 AT4G21690 242 / 3e-77 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10013137 [exp] 167 / 9e-51 AT4G21690 140 / 1e-40 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10008099 [exp] 166 / 3e-49 AT4G21690 137 / 3e-38 ARABIDOPSIS THALIANA GIBBERELLIN 3-OXIDASE 3, gibberellin 3-oxidase 3 (.1) Lus10030995 [exp] 162 / 2e-46 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1) Lus10027399 [exp] 159 / 3e-45 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10032930 [exp] 158 / 3e-45 AT5G24530 504 / 0.0 DOWNY MILDEW RESISTANT 6, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 158 / 2e-44 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.006G247700.1 pacid=42769365 polypeptide=Potri.006G247700.1.p locus=Potri.006G247700 ID=Potri.006G247700.1.v4.1 annot-version=v4.1 ATGAGCACTCTTTCTGAAGCCTATCGAGACCTTCCTCACCATCCCCACCATATTATCCCACTAGACTTTGATTCGGTCCGAACCTTGCCCGACTCACATG TATGGCAGCCTACTTCCCATGCCTCTGAGTCCGAAGACCGATTATCGATTCCCACTGTCGACCTCAAGGATCCTGATGCAGGGAAACTGATAGGGCATGC TTGTGAGGCATGGGGCGCGTTCCAAGTCACAAACCATGACATTCCATTGGACCTATTCCATGAAGTTGAGTCCGAGGCTAGAAGACTCTTCTCTCTCCCG ACAGGACAGAAATTGAAGGCCTTAAGGTCTCCTGGTGGAGCCACCGGCTATGGCTTAGCTCGGATTTCGCCATTCTTCAACAAGTATATGTGGCATGAAG GGTTTACAATCATGGGTTCTTCTATTGATCACGCTAGGGATCTCTGGCCCAATGACTACCGAAGGTTTTGCGATGTAATGGAAGATTATCAGAAGAAAAT GAAGGAGCTAGCCGTAACCCTAATGCATCTAGTTCTCAAGTCCTTGGACATATCTGAAGAAGAAATAAGTAGAGTCGTTTCAGCTGGAGGTGACAGCACT GCTTTACAGCTGAACTCTTATCCATTATGTCCTGACCCAAATCGAGCCATGGGTCTAGCTCCCCACACAGACACTTCCCTCTTGACAATACTACACCAAA GTACAGTAAATGGCTTGCAAATCTTCAAAGAAGGAGTTGGTTGGGTTCTAGTATCTCCCACAAACGGATCTCTTGTAGTAAATGTGGGTGATCTCCTGCA TATTCTCTCAAATGCTCAGTTTCGTAGTGTTCTTCATCGTGTGGTTATGAAAGAGAACCAACAAAGGCTGTCCTTGGCTTATTTTTACTGCCTTCCTTCT GATTTCCATATCTCTCCTCTGGCTTTGAATTCTACCCAAATGCCTCTATATCGTTCTGTATCGGTCAGAGATTATATTGGCATCAAGGCTAAGAATCTTG AGAAAGCACTATCTTTGATCAGAATTTAG
AA sequence Show only first row Show all	>Potri.006G247700.1 pacid=42769365 polypeptide=Potri.006G247700.1.p locus=Potri.006G247700 ID=Potri.006G247700.1.v4.1 annot-version=v4.1 MSTLSEAYRDLPHHPHHIIPLDFDSVRTLPDSHVWQPTSHASESEDRLSIPTVDLKDPDAGKLIGHACEAWGAFQVTNHDIPLDLFHEVESEARRLFSLP TGQKLKALRSPGGATGYGLARISPFFNKYMWHEGFTIMGSSIDHARDLWPNDYRRFCDVMEDYQKKMKELAVTLMHLVLKSLDISEEEISRVVSAGGDST ALQLNSYPLCPDPNRAMGLAPHTDTSLLTILHQSTVNGLQIFKEGVGWVLVSPTNGSLVVNVGDLLHILSNAQFRSVLHRVVMKENQQRLSLAYFYCLPS DFHISPLALNSTQMPLYRSVSVRDYIGIKAKNLEKALSLIRI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15550		ATGA3OX1, GA4	GA REQUIRING 4, ARABIDOPSIS TH...		Potri.006G247700 [exp]	0	1	Pt-WGA3.1
AT3G58000			VQ motif-containing protein (....		Potri.009G024200 [exp]	3.00	0.9651
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.003G091300 [exp]	3.74	0.9703
AT2G44340			VQ motif-containing protein (....		Potri.001G230800 [exp]	6.48	0.9579
AT5G17450		HIPP21	heavy metal associated isopren...		Potri.017G123400 [exp]	7.07	0.9531
AT1G74100		SOT16, ATSOT16,...	CORONATINE INDUCED-7, ARABIDOP...		Potri.011G048100 [exp]	7.74	0.9599
AT4G17800	AT-hook		Predicted AT-hook DNA-binding ...		Potri.001G142800 [exp]	8.00	0.9605
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134450 [exp]	8.94	0.9558
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	8.94	0.9601
AT1G24430			HXXXD-type acyl-transferase fa...		Potri.010G054002 [exp]	9.79	0.9515
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.002G156900 [exp]	9.94	0.9552

Compare expression of checked genes

Potri.006G247700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.