Plant FIBer expression Database

Potri.006G247900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32560 271 / 3e-90 paramyosin-related (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.006G247900.1 pacid=42768597 polypeptide=Potri.006G247900.1.p locus=Potri.006G247900 ID=Potri.006G247900.1.v4.1 annot-version=v4.1
ATGCAACAACAACACGATGACGATACTAACAAGGTCATGCGATTTGAAGAGGAAGAGCTACAAAGTGCAAGAGCTTCAGTAGAAACACTGACTGCCAATT
TGGACAATCTGAATCAAAGAAAGGCTGATGTTTTGAACAATTTGGAACAATTACGAGAAAGAATCAATAAAGAAGGCGATGCTACTTATACCGGGGTGCA
GAAATTAGTCCCTCTTTTGAAGTCACTAAAGGATTTGGAATCGCAAGAATCTGTTTTGCAATCTGATTACGATGTGAAGAGAACTGAATTGGAAGCTGAA
GTTTGTAATTTGGAGGAGAAAATAGCTGCTGGGATGGACAGTGAGGGTTTGTGTAAGGACTTAGATTGTTTATTGAGTGAGTCACTGGAGAAACTCAATG
CAGCGAAGAAGGAATTAGCAGCTAGATTGAGGGCAGTGATGTCGGTAAAGCGGAAACTTGGTGAAGTGCCAACACAATCCGAACTTATCCAGTATGAACG
TGGGTTTTCAGATGTGAATGATCATATCCAGGAAAAACATCGACAAACCCGCAAATATTATGCAACCTATAATACTCTTTTGGAGATTAAAGAATTGATG
CTAAAGGAAACTTCTTTATTGAATTCAATAAGTTCACAGTTTCAGGATGCCATTACAACTACCAATGGTTGCACAAAACTGATTGCTTCCATGGAAGGAA
TTGTCAAGGGCAGCCAACAGAAGCTGCAAAAGGTCGAACTTGGGCTTCAAGAAGAGCAGAAGGTTTCTGATGCTCTCAAGAAGAGGTATGCTGCAGCCAT
TGCAGAGCAAAGGCGCTGCTATTCCCTCTTGAAGGCTTTTCAGGAAGAATGTGCAAAGAATGAGAGACTTCGGGGCCAGACTTCTGTTTAA
AA sequence
>Potri.006G247900.1 pacid=42768597 polypeptide=Potri.006G247900.1.p locus=Potri.006G247900 ID=Potri.006G247900.1.v4.1 annot-version=v4.1
MQQQHDDDTNKVMRFEEEELQSARASVETLTANLDNLNQRKADVLNNLEQLRERINKEGDATYTGVQKLVPLLKSLKDLESQESVLQSDYDVKRTELEAE
VCNLEEKIAAGMDSEGLCKDLDCLLSESLEKLNAAKKELAARLRAVMSVKRKLGEVPTQSELIQYERGFSDVNDHIQEKHRQTRKYYATYNTLLEIKELM
LKETSLLNSISSQFQDAITTTNGCTKLIASMEGIVKGSQQKLQKVELGLQEEQKVSDALKKRYAAAIAEQRRCYSLLKAFQEECAKNERLRGQTSV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32560 paramyosin-related (.1.2.3) Potri.006G247900
[exp]
0 1
AT5G51400 PLAC8 family protein (.1) Potri.003G108800
[exp]
2.44 0.7668
AT2G18290 EMB2783, APC10 EMBRYO DEFECTIVE 2783, anaphas... Potri.005G121700
[exp]
7.34 0.6453
AT2G02390 GST18, ATGSTZ1 GLUTATHIONE S-TRANSFERASE 18, ... Potri.014G069600
[exp]
7.93 0.6753
AT3G07550 RNI-like superfamily protein (... Potri.017G056400
[exp]
14.14 0.6950
AT4G04210 PUX4 plant UBX domain containing pr... Potri.011G005000
[exp]
17.88 0.7556
AT1G17130 Family of unknown function (DU... Potri.001G377800
[exp]
29.39 0.5712
AT4G05050 UBQ11 ubiquitin 11 (.1.2.3.4) Potri.016G088100
[exp]
30.46 0.6042 Pt-SUBI.1
AT1G20200 HAP15, EMB2719 HAPLESS 15, EMBRYO DEFECTIVE 2... Potri.009G136900
[exp]
37.62 0.6919
Potri.001G241254
[exp]
41.89 0.5796
AT3G14680 CYP72A14 "cytochrome P450, family 72, s... Potri.011G101750
[exp]
49.31 0.6377

Potri.006G247900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.