Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	LUG.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32551 997 / 0 RON2, LUG ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) AT2G32700 439 / 3e-141 MUM1, LUH MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) AT2G41500 105 / 2e-23 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT4G02730 94 / 2e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 93 / 3e-20 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G25150 94 / 1e-19 TAF5 TBP-associated factor 5 (.1) AT5G08390 89 / 8e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT2G33340 86 / 3e-17 MAC3B MOS4-associated complex 3B (.1.2.3) AT1G61210 85 / 1e-16 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G23430 84 / 3e-16 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033300 [exp] 1182 / 0 AT4G32551 657 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Potri.001G049400 [exp] 473 / 2e-154 AT2G32700 1057 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.003G178600 [exp] 467 / 4e-152 AT2G32700 1051 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.002G241800 [exp] 414 / 7e-132 AT2G32700 899 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.004G045601 [exp] 342 / 9e-106 AT2G32700 354 / 1e-111 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Potri.006G045800 [exp] 108 / 4e-24 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 100 / 6e-23 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 90 / 4e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 89 / 6e-18 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017754 [exp] 687 / 0 AT4G32551 778 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10033066 [exp] 671 / 0 AT4G32551 746 / 0.0 ROTUNDA 2, LEUNIG, LisH dimerisation motif;WD40/YVTN repeat-like-containing domain (.1.2) Lus10043135 [exp] 451 / 6e-146 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10032614 [exp] 450 / 2e-145 AT2G32700 1073 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 384 / 1e-120 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10011863 [exp] 381 / 3e-118 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10021059 [exp] 115 / 2e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10004167 [exp] 113 / 1e-25 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 104 / 5e-24 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 104 / 5e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.006G248100.14 pacid=42768670 polypeptide=Potri.006G248100.14.p locus=Potri.006G248100 ID=Potri.006G248100.14.v4.1 annot-version=v4.1 ATGTCTCAAACCAACTGGGAAGCTGATAAAATGTTGGATGTGTATATCCATGATTATTTGGTAAAAAGGGACTTGAAGGCTTCTGCCCAGGCTTTTCAAG CTGAAGGAAAAGTGTCATCTGACCCTGTAGCTATCGATGCACCTGGAGGCTTTCTCTTTGAATGGTGGTCAGTGTTCTGGGATATATTCATTGCGAGGAC CAATGAGAAGCACTCAGAGGTTGCTGCGTCTTACATTGAGACTCAGTTACTTAAAGCACGGGAACAGCAGCAGCAAGGTCAACAACCACAGCACCAACAG CAGCAGCAACAGCAAATGCAAATGCAACAGCTCCTATTGCAGAGGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACCTCCACAGCAGCAGCAGCAGC AGCAGCAGCAGCAGCAGCATCAACAGCAGCAGCAGCAACAGCAGCAGCAGAGAAGGGATGGTGCCCACCTCCTTAATGGTGCTGCAAATGGGCTTGTGGG AAATGATCCTCTCATGCGCCAAAATACTGCAACTGCTAATGCAATGGCTACAAAGATGTACGAGGAAAAATTAAAATTACCAATGGAGAGGGATTCATTG ACAGATGCTGCAATGAAGCAAAGATTTGGTGAGAGTGTAGGGCATCTTTTGGATCCAAATGCCTCGATTTTGAAGTCTGCTGCAGCAGCAACTGGCCAGC CTTCAGGGCAAGTGTTGCATGGTGCTTCTGGTGGAATGTCCCCACAGGTCCAGGCTCGGAATCAGCAGTTGTCAGGGTCCACGCCGGACATAAAGAGTGA GATAAATCCTGTGCTGAATCCAAGAGCTGCTGGTCCAGAAGGATCACTGATAGGAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTAAGAGGA TGGCCACTCCATGGATTGGAACAACTTCGATCAGGACTTCTTCAGCCACAAAAACCTTTTATACAGGCTCCTCAGCCCTTTCATCAAATTCAGATGTTAA CACCACAGCACCAGCAGCTTATGCTGGCACAACAAAATCTAACATCACCAGCTGCTAGTGATGAAAGTAGAAGGCTGAGAATGCTTTTAAATAACCGGAA TGTGAGTATTGGAAAGGATGGCCTTACAAATTCTGTTGGTGATGTTATTCCAAATGGTGGATCCCCTTTGCAAACAGGTGGCCCACTTTTGTCTCGTGGA GATCCAGATATGCTGATGAAGTTAAAAATAGCCCAGTTCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAGCAGCAATCCACAGCAGCAAC TTCTCCAGCAGCATGTGCTTTCAAATCAGCAATCACAGAGTTCAAATCACAATCTTCATCCGCAAGATAAGATGGGGGATGCTGGCAGTGTCAATGTCGA TGGTAGCATATCCAACTCTTTTCGAGGAAATGATCAGGTTTCAAAAAACCCGACTGGGAGAAAGAGAAAACAGCCAGTGTCTTCTTCAGGTCCTGCCAAT AGCTCAGGAACTGCAAATACAGCAGGACCCTCCCCAAGTTCAGCACCTTCAACGCCTTCAACCCACACACCTGGAGATGTGATCTCAATGCCTGCTCTGC CTCATAGTGGTGGTTCTTCTAAGCCTTTTATATTTGGGGCGGATGGTACAGGCACTCTTACATCACCATCAAATCAGTTGTGGGATGACAAAGATCTTGA ATTGCAGGCTGATATGGATCGTTTTGTGGAGGATGGATCTCTTGAGGATAATGTCGACTCTTTTTTATCCCATGAAGATAATGACCCTAGAGATGCAGTT CCTCGTATGGATTTGAGCAAAGGATTCTCATTTACTGAAGTGAATTCTGTTAGAGCAAGTGCAAGCAAAGTAATCTGTTGCCACTTCTCATCAGATGGAA AATTGCTTGCTAGTGGTGGCCATGATAAAAAGGCTGTATTGTGGTACACGGATACTTTAAAGCCAAAAACTACCCTTGAAGAACATACATCTCTGATTAC TGATGTCCGTTTCAGCCCAAGCATGTCACGACTTGCAACATCATCATTTGACAAAACTGTTAGGGTTTGGGATGCTGACAATCCTAATTTCTCACTCCGC ACTTTTACCGGACATTCCACCACTGTAATGTCACTAGACTTCCACCCAAATAAAGATGACCTTATAAGCTCTTGTGATGGAAATGGTGAAATAAGGTACT GGAGTGTTACCAATGGTAGCTGTGCAAGAGTATTCAAGGGTGGTATGGCCCAAATGAGATTTCAACCTCGCGTGGGAAGGTATCTTGCTGCTGCGGCTGA AAATGTTGTGTCTATACTGGATGTTGAGACACAAGCTTGTCGACATTCATTACAGGGACATACTAAGCCAATTCATTCTGTTTGTTGGGATCCTTCTGGT GAGTTTCTGGCATCTGCCAGTGAGGACTCTGTCAGAGTCTGGACGCTTGGATCAGGAAGTGAGGGCGAATGTGTTCATGAGTTGAGTTGTAATGGCAACA AATTCCACTCTTGTGTTTTCCACCCTACATTCCCTTCGTTGCTAGTCATTGGCTGTTACCAGTCTTTGGAGCTTTGGAACATGAATGAGAACAAGACAAT GACTCTGCCAGCCCATGAGGGTCTAATTGCTGCTTTGGCTGTATCAACTGCTACAGGGTTGGTTGCTTCTGCTAGTCATGATAAGTTCGTTAAACTGTGG AAATGA
AA sequence Show only first row Show all	>Potri.006G248100.14 pacid=42768670 polypeptide=Potri.006G248100.14.p locus=Potri.006G248100 ID=Potri.006G248100.14.v4.1 annot-version=v4.1 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLLKAREQQQQGQQPQHQQ QQQQQMQMQQLLLQRQQQQQQQQQQQPPQQQQQQQQQQQHQQQQQQQQQQRRDGAHLLNGAANGLVGNDPLMRQNTATANAMATKMYEEKLKLPMERDSL TDAAMKQRFGESVGHLLDPNASILKSAAAATGQPSGQVLHGASGGMSPQVQARNQQLSGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGGNNLTLRG WPLHGLEQLRSGLLQPQKPFIQAPQPFHQIQMLTPQHQQLMLAQQNLTSPAASDESRRLRMLLNNRNVSIGKDGLTNSVGDVIPNGGSPLQTGGPLLSRG DPDMLMKLKIAQFQQQQQQQQQQQQQSSNPQQQLLQQHVLSNQQSQSSNHNLHPQDKMGDAGSVNVDGSISNSFRGNDQVSKNPTGRKRKQPVSSSGPAN SSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGGSSKPFIFGADGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLEDNVDSFLSHEDNDPRDAV PRMDLSKGFSFTEVNSVRASASKVICCHFSSDGKLLASGGHDKKAVLWYTDTLKPKTTLEEHTSLITDVRFSPSMSRLATSSFDKTVRVWDADNPNFSLR TFTGHSTTVMSLDFHPNKDDLISSCDGNGEIRYWSVTNGSCARVFKGGMAQMRFQPRVGRYLAAAAENVVSILDVETQACRHSLQGHTKPIHSVCWDPSG EFLASASEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTFPSLLVIGCYQSLELWNMNENKTMTLPAHEGLIAALAVSTATGLVASASHDKFVKLW K

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	0	1	LUG.1
AT1G18610			Galactose oxidase/kelch repeat...		Potri.015G059400 [exp]	1.41	0.8811
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	4.47	0.8598	Pt-PHYB.1
AT1G06510			unknown protein		Potri.005G203100 [exp]	4.58	0.8866
AT3G19740			P-loop containing nucleoside t...		Potri.005G093300 [exp]	5.47	0.8685
AT1G73210			Protein of unknown function (D...		Potri.004G068700 [exp]	6.32	0.8662
AT1G06950		ATTIC110, TIC11...	ARABIDOPSIS THALIANA TRANSLOCO...		Potri.013G154300 [exp]	6.48	0.8792
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.006G014400 [exp]	6.70	0.8645
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	6.92	0.8667
AT4G37560			Acetamidase/Formamidase family...		Potri.005G145400 [exp]	8.06	0.8572
AT5G55600			agenet domain-containing prote...		Potri.016G007500 [exp]	8.48	0.8576

Compare expression of checked genes

Potri.006G248100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.