Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-YUC.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11320 597 / 0 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT4G32540 585 / 0 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT1G04180 491 / 1e-173 YUC9 YUCCA 9 (.1) AT1G04610 491 / 5e-173 YUC3 YUCCA 3 (.1) AT4G13260 488 / 2e-172 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT4G28720 487 / 9e-172 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT5G25620 485 / 4e-171 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) AT5G43890 474 / 7e-167 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT2G33230 464 / 8e-163 YUC7 YUCCA 7 (.1) AT1G21430 356 / 6e-121 YUC11 Flavin-binding monooxygenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033200 [exp] 707 / 0 AT5G11320 546 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.006G243400 [exp] 520 / 0 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 511 / 0 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.002G254200 [exp] 506 / 3e-179 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.007G028200 [exp] 489 / 8e-173 AT5G25620 495 / 5e-175 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 487 / 1e-171 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.010G062400 [exp] 478 / 1e-166 AT1G04610 657 / 0.0 YUCCA 3 (.1) Potri.002G207400 [exp] 357 / 2e-121 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.016G003300 [exp] 353 / 8e-120 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013125 [exp] 630 / 0 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 625 / 0 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10035244 [exp] 495 / 4e-175 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10023695 [exp] 495 / 1e-174 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10022851 [exp] 488 / 4e-172 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 480 / 4e-169 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011093 [exp] 478 / 2e-168 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 478 / 2e-168 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10024023 [exp] 474 / 5e-167 AT5G25620 479 / 7e-169 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Lus10041729 [exp] 469 / 2e-164 AT5G25620 473 / 6e-166 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.006G248200.1 pacid=42767779 polypeptide=Potri.006G248200.1.p locus=Potri.006G248200 ID=Potri.006G248200.1.v4.1 annot-version=v4.1 ATGGATTCTTGTAAAGAGCAAGAACAACAAGGGTTTAACCAAGCAAAGTTCGTTAAGGTTCTTGGACCTATCATTGTAGGTGCAGGACCATCTGGTTTAG CAGTTGCAGCTTGCCTTTCCCAACAAGGAGTCCCTTCTCTAATTCTTGAAAAAAATGACTGCATAGCTTCTCTCTGGCAACAAAAAACCTACGATCGCTT AAAACTTCACCTTCCTAAACAGTTTTGTGAACTCCCACTTCGTGGTTTCCCTGATGATTTCCCCAAGTACCCTACAAAAGGCCAATTCATTTCTTACATG GAGTCTTATGCTTCGCATTTCAGAATCCAGCCTAAATTCAACCAAGCCGTAAAAACGACAGAATTTGACCACGGGGTCTGGAGGGTGCAAACTGAAGACC TTGAGTACCATTCTAGGTGGCTTATTGTTGCTACTGGCGAGAATGCTGAGCCTGTTATACCTGATATAGTTGGTTATGACAAGTTTAAAGGTAATATTCT ACATACAAGTGAGTACAAGTCTGGTTCTAAGTTCAAGAACCAAAGGGTCTTGGTTGTTGGGTGTGGCAACTCAGGGATGGAAGTTAGCTTAGACCTTTGT AGGCACAATGCAATCCCTCACATGGTTGTTAGAAACACAGTGCATGTTCTACCCAGAGAGATGTTTGGCATGTCAACATTTGGAATAGCCATGGCACTTC TGAAGTGGTTACCTTTAAGATTGGTGGACAAATTTCTACTTCTAGTAGCCAATCTCATCTTGGGCAACACAGAACAATTAGGCCTCAAACGACCAAAAAC AGGCCCGATTGAGCTCAAGAATGTCACTGGAAAGACACCAGTGTTAGATGTCGGTGCATTATCACAAATCAAGTCTGGCAAAATTAAGGTGATGGAAGGT GTGAAGGAGGTAACAAAAAACGGAGTCAAATTCATGAATGGACAAGAAAAGAAGTTCGAGTCTATAATCTTAGCCACTGGGTACAAAAGCAATGTGCCTA CTTGGCTCAAGGGATGTGATTTTTTCACAAAAGATGGGATGCCCAAAACACCCTTTCCTAACGGCTGGAAAGGCGAAAATGGACTGTACACAGTTGGTTT CACAAGACGAGGTCTCTTAGGAACAGCCTCTGATGCTGTGAAAATTGCACAGGACATTGGTGATCAATGGAAGACAATCAAGGGCAACGATAAATCTTGC AATTCCCATGTTATCATACTTGGAAAACCATGGTGA
AA sequence Show only first row Show all	>Potri.006G248200.1 pacid=42767779 polypeptide=Potri.006G248200.1.p locus=Potri.006G248200 ID=Potri.006G248200.1.v4.1 annot-version=v4.1 MDSCKEQEQQGFNQAKFVKVLGPIIVGAGPSGLAVAACLSQQGVPSLILEKNDCIASLWQQKTYDRLKLHLPKQFCELPLRGFPDDFPKYPTKGQFISYM ESYASHFRIQPKFNQAVKTTEFDHGVWRVQTEDLEYHSRWLIVATGENAEPVIPDIVGYDKFKGNILHTSEYKSGSKFKNQRVLVVGCGNSGMEVSLDLC RHNAIPHMVVRNTVHVLPREMFGMSTFGIAMALLKWLPLRLVDKFLLLVANLILGNTEQLGLKRPKTGPIELKNVTGKTPVLDVGALSQIKSGKIKVMEG VKEVTKNGVKFMNGQEKKFESIILATGYKSNVPTWLKGCDFFTKDGMPKTPFPNGWKGENGLYTVGFTRRGLLGTASDAVKIAQDIGDQWKTIKGNDKSC NSHVIILGKPW

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11320		YUC4	YUCCA4, Flavin-binding monooxy...		Potri.006G248200 [exp]	0	1	Pt-YUC.2
AT5G58860		CYP86A1	"cytochrome P450, family 86, s...		Potri.001G249700 [exp]	6.08	0.8938	CYP86.5
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	7.14	0.8747
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	8.00	0.8716
AT1G53270		ABCG10	ATP-binding cassette G10, ABC-...		Potri.011G112100 [exp]	13.03	0.8574	2
AT5G05340			Peroxidase superfamily protein...		Potri.016G132900 [exp]	13.49	0.8272	Pt-PRX1.14
AT2G38870			Serine protease inhibitor, pot...		Potri.016G078900 [exp]	13.71	0.8076
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	14.00	0.8795
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.005G071100 [exp]	14.69	0.8317
AT3G47800			Galactose mutarotase-like supe...		Potri.004G129700 [exp]	15.16	0.8319
AT3G62270			HCO3- transporter family (.1)		Potri.015G077600 [exp]	16.49	0.8453

Compare expression of checked genes

Potri.006G248200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.