Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25620 478 / 4e-169 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT2G33700 292 / 3e-96 Protein phosphatase 2C family protein (.1) AT3G51470 287 / 1e-94 Protein phosphatase 2C family protein (.1) AT3G62260 249 / 1e-79 Protein phosphatase 2C family protein (.1.2) AT1G48040 231 / 1e-72 Protein phosphatase 2C family protein (.1) AT3G17250 208 / 4e-63 Protein phosphatase 2C family protein (.1) AT5G24940 141 / 1e-37 Protein phosphatase 2C family protein (.1) AT5G10740 133 / 2e-35 Protein phosphatase 2C family protein (.1) AT4G31750 132 / 2e-35 WIN2 HOPW1-1-interacting 2 (.1) AT2G40180 133 / 4e-35 ATHPP2C5 phosphatase 2C5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G033000 [exp] 650 / 0 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G059600 [exp] 340 / 5e-115 AT2G25620 375 / 9e-129 DNA-binding protein phosphatase 1 (.1) Potri.018G115100 [exp] 329 / 4e-111 AT2G25620 350 / 4e-119 DNA-binding protein phosphatase 1 (.1) Potri.005G253700 [exp] 302 / 4e-100 AT2G33700 584 / 0.0 Protein phosphatase 2C family protein (.1) Potri.002G007500 [exp] 296 / 4e-98 AT2G33700 560 / 0.0 Protein phosphatase 2C family protein (.1) Potri.007G058700 [exp] 294 / 4e-97 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.005G102500 [exp] 290 / 1e-95 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.014G115500 [exp] 258 / 8e-83 AT3G62260 461 / 2e-162 Protein phosphatase 2C family protein (.1.2) Potri.002G190400 [exp] 238 / 2e-75 AT3G62260 436 / 6e-153 Protein phosphatase 2C family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013124 [exp] 499 / 8e-178 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10008091 [exp] 483 / 2e-171 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10001682 [exp] 323 / 3e-108 AT2G25620 381 / 6e-131 DNA-binding protein phosphatase 1 (.1) Lus10030731 [exp] 302 / 6e-100 AT2G33700 553 / 0.0 Protein phosphatase 2C family protein (.1) Lus10013213 [exp] 298 / 2e-98 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10016030 [exp] 293 / 1e-96 AT2G33700 550 / 0.0 Protein phosphatase 2C family protein (.1) Lus10012244 [exp] 282 / 1e-91 AT2G33700 533 / 0.0 Protein phosphatase 2C family protein (.1) Lus10009993 [exp] 242 / 9e-77 AT3G62260 446 / 1e-156 Protein phosphatase 2C family protein (.1.2) Lus10038058 [exp] 231 / 2e-72 AT3G62260 442 / 4e-155 Protein phosphatase 2C family protein (.1.2) Lus10037832 [exp] 219 / 8e-68 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.006G248400.1 pacid=42769985 polypeptide=Potri.006G248400.1.p locus=Potri.006G248400 ID=Potri.006G248400.1.v4.1 annot-version=v4.1 ATGGAAGGAAATAATGGGAGTTCGGGTGAAAGTAATAGTAGACCACCAATACCTCTATCTGCTGCTGCTACCACCACCACGACGTCGTGGAGACAGTGTT TTAGCATTGACAGTGTGCCTGTAAGCTGTAAAAAGACTCTGGTTCGTCACCAGTCCCTTGTGAAGACAAAGAAGTTGGATATCTCTGTTAAACCTAACCT TGGTGCAGAAAATCACGATGCAGATTTCGTTCCGATTGTTCGTTCTGGAGCATGGGCGGATATTGGCTTTCGCTCAAGTATGGAAGATGTATACATGTGT GCTGACAATTTTATGAGTGATTATGGACTCAAGAATGCTACTGATGGGCCCAATGCCTTTTATGGGGTGTTTGATGGACATGGTGGAAAGCATGCTGCTG ACTTTGCATGCTACCATCTGCCAAGATTCATTGCTGAGGATGAAGACTTTCCGGTGGAGGTTGAGAGGGTCATTGCTTCTGCATTTCTGCAAACTGACTC TGCTTTTGCGAAGGCTTGCTCCCTGGATGCAGCTCTTGCTTCTGGAACCACTGCACTGGCAGCTCTTGTTGTTGGGAGGTTGTTAGTTGTGGCAAATGCT GGAGATTGTCGAGCAGTGTTGTGCCGCGGCGGCAATGCCATTGACATGTCTAACGATCACAAACCGACGTGTAGCAAAGAAAGGAAGCGCATTGAGGCAT CTGGGGGGTATGTTTATGATGGTTATCTCAATGGACTCCTCAATGTAGCTCGTGCTTTGGGAGACTGGCACATGGAAGGGCTGAAAGGTAGTGGCAGTGA TGGTGGGCCATTGAGTGCAGAGCCTGAGCTTATGACTAGACAATTGACAGAGGAAGATGAATTCATCATCATAGGTTGTGATGGGATCTGGGATGTGTTC AGGAGCCAAAACGCTGTGGATTTTGCTAGGCGGAGGCTTCAGGAGCACAATGACCCAGTCATGTGCAGCAAAGATCTTGTTGATGAAGCCTTGAAGAGGA AGAGTGGCGATAATTTAGCTGTTATCGTGGTTTGCTTCCAGTCCGAGCCTCCCCGTAACTTGGTTGCCCCACGCCCAAGGGTTCACAGGAGCATATCCGC CGATGGTTTGAGGGAGTTGCAGAGCTTCTTGGATGACTTGGCAAAATGA
AA sequence Show only first row Show all	>Potri.006G248400.1 pacid=42769985 polypeptide=Potri.006G248400.1.p locus=Potri.006G248400 ID=Potri.006G248400.1.v4.1 annot-version=v4.1 MEGNNGSSGESNSRPPIPLSAAATTTTTSWRQCFSIDSVPVSCKKTLVRHQSLVKTKKLDISVKPNLGAENHDADFVPIVRSGAWADIGFRSSMEDVYMC ADNFMSDYGLKNATDGPNAFYGVFDGHGGKHAADFACYHLPRFIAEDEDFPVEVERVIASAFLQTDSAFAKACSLDAALASGTTALAALVVGRLLVVANA GDCRAVLCRGGNAIDMSNDHKPTCSKERKRIEASGGYVYDGYLNGLLNVARALGDWHMEGLKGSGSDGGPLSAEPELMTRQLTEEDEFIIIGCDGIWDVF RSQNAVDFARRRLQEHNDPVMCSKDLVDEALKRKSGDNLAVIVVCFQSEPPRNLVAPRPRVHRSISADGLRELQSFLDDLAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25620		AtDBP1	DNA-binding protein phosphatas...		Potri.006G248400 [exp]	0	1
AT4G22320			unknown protein		Potri.004G001500 [exp]	7.00	0.5779
AT1G43790		TED6	tracheary element differentiat...		Potri.002G072000 [exp]	14.79	0.6706
AT2G15220			Plant basic secretory protein ...		Potri.001G299400 [exp]	23.91	0.5845
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Potri.005G015400 [exp]	31.63	0.5598
AT3G17430			Nucleotide-sugar transporter f...		Potri.008G214300 [exp]	36.74	0.5462
AT4G22590		TPPG	trehalose-6-phosphate phosphat...		Potri.001G120500 [exp]	42.47	0.5350
					Potri.011G107301 [exp]	44.49	0.5555
AT4G31290			ChaC-like family protein (.1)		Potri.006G279000 [exp]	66.34	0.4981
					Potri.011G106900 [exp]	79.32	0.5248
AT2G20562			unknown protein		Potri.011G114600 [exp]	82.58	0.5186

Compare expression of checked genes

Potri.006G248400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.