Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41840 81 / 1e-15 F-box/RNI-like superfamily protein (.1) AT4G14103 70 / 1e-12 F-box/RNI-like superfamily protein (.1.2) AT3G62440 70 / 2e-12 SAF1 secondary wall thickening-associated F-box 1, F-box/RNI-like superfamily protein (.1) AT3G58920 64 / 1e-10 F-box/RNI-like superfamily protein (.1) AT4G00320 64 / 2e-10 F-box/RNI-like superfamily protein (.1) AT1G58310 62 / 5e-10 F-box/RNI-like superfamily protein (.1) AT3G59200 62 / 5e-10 F-box/RNI-like superfamily protein (.1) AT3G59210 62 / 7e-10 F-box/RNI-like superfamily protein (.1.2.3.4) AT3G26922 60 / 1e-09 F-box/RNI-like superfamily protein (.1) AT4G14096 61 / 2e-09 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G244700 [exp] 844 / 0 AT5G41840 78 / 8e-15 F-box/RNI-like superfamily protein (.1) Potri.017G119200 [exp] 189 / 1e-52 AT3G58900 49 / 8e-06 F-box/RNI-like superfamily protein (.1.2.3.4) Potri.005G252701 [exp] 93 / 1e-21 AT5G02930 52 / 8e-08 F-box/RNI-like superfamily protein (.1) Potri.011G104100 [exp] 74 / 6e-14 AT3G26922 96 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104200 [exp] 72 / 2e-13 AT3G26922 97 / 2e-22 F-box/RNI-like superfamily protein (.1) Potri.011G104300 [exp] 67 / 1e-11 AT3G26922 91 / 2e-20 F-box/RNI-like superfamily protein (.1) Potri.001G322900 [exp] 64 / 2e-10 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G121500 [exp] 59 / 7e-09 AT4G14103 142 / 6e-38 F-box/RNI-like superfamily protein (.1.2) Potri.012G099400 [exp] 59 / 8e-09 AT5G44950 77 / 1e-14 F-box/RNI-like/FBD-like domains-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006866 [exp] 63 / 4e-10 AT1G73040 194 / 5e-58 Mannose-binding lectin superfamily protein (.1) Lus10038967 [exp] 49 / 1e-05 AT3G18150 77 / 9e-15 RNI-like superfamily protein (.1) Lus10006726 [exp] 46 / 3e-05 AT1G61330 66 / 1e-12 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Lus10042304 [exp] 45 / 5e-05 AT2G39415 59 / 1e-11 F-box family protein (.1) Lus10024701 [exp] 43 / 7e-05 AT1G78760 70 / 4e-15 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 45 / 0.0001 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10027244 [exp] 44 / 0.0004 AT5G02930 69 / 2e-12 F-box/RNI-like superfamily protein (.1) Lus10006970 [exp] 43 / 0.0008 AT4G03220 74 / 3e-14 Protein with RNI-like/FBD-like domains (.1) Lus10042331 [exp] 42 / 0.0009 AT3G18150 67 / 7e-13 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.006G248600.1 pacid=42769726 polypeptide=Potri.006G248600.1.p locus=Potri.006G248600 ID=Potri.006G248600.1.v4.1 annot-version=v4.1 ATGGACAGTCCATCCAAGTTGATGGTAATGAGCTCTCGTCGAGACACACTTATTATCCTCGCCTCTACACGTGATATATTGAGCAGTCTCCCAGACCAAA TTATCTATCATATTTTCTCATTCCTTGGTGCTAATGATACTGCACGTCTTGGTGTAGTGTCAAAAAGGTTTAATCAACTATGCACATCTAGCCCTTACCT GAATTTCGTTGCGGATTTTGATTCTGATTATTCTGATCCTAGCTGTTTAAGAACAAGGTATACCGATTTCTGTTCTTATGTCAATAAAGTGCTGCGATGG CGCGAAAAGACTGGAGGAGGGCTACAACGTTTGCATGTTCATTGGCACTCCTGCAAGAAAAGAAGGTTTGATATTGGAGAGACTGCTGTTAATTCATGGG TTACTATTGCTACAAAGTGTGGAGTTGAAGAGCTTGACATGCTACTCCATGTAGACCCATGGAGAGGCTATTCTTTGCCGGGTTGTGTTTATAACTGTGA ATCTTTGAGGGCTTTGAAATTGAATTTGCAGATGGGGAGGTTCAATTTTCGAGTAGCAGGGTGGGACTGGCTCAAGGACCTGTGGCTAGATTCAGTTACC GTAGAGGATATATATTTTGGACAGAGGATTTCTGAATGGTGTAAATCTCTTAAAAGGCTAACTCTCGAGGATGTTGATGGCATTAGTGGTGGTCTCAATA TGACAACTTCATCTCTTGAAGAGTTGACAATAAGTGGTTGCGATTTTGCTTTTACTGGTGGGAATTTTAACATATCTAGCTCATCTTTTAAGACTTTGAC AATATACAGGTGCCAGTTTAAAGCCCAGAGGCATGTTAACCTTAACTGTCCATCTTTGGAAAATCTGACAGTCCATGACTCTGAGTTTGGAAAATGTTTT CTTTGTAAGATAAGTTGTGAATCTCTTGAGAAACTAAGAGTCTGTGGGTCTAGTTTCCTTGAAGCCTGCCATTTCCGCATCGCTTGTCCATCTGTTGGCC AAGTCATGATTAGCAGCTGCAGGTTTGCAGGTACTTGCGTTCTTAACATCAATAGCTTTTCCCTTCAAGACTTAACTGTGTCAGAGTGCAACTTTAGCTC TCTAGGAAGTGCTTTGCAATATTTGCCCCCAGTAAAAGACTTCCAAGCAGTTCCACGCCTCCGCAGGCACATCATTGTCAAGGCTGCAAACCTTGAGAAA TTGAATATAAGCTCCTCAGATGAATATTCATATGAATTTCCTCTGAAAATTGATGCCCCCAATCTCAAGGTCTTATGGTGGGCTGGAGATCCTGTAGATT TTAGTTTTTTGAAGCAGGACATGTTCATGTCACTAACGAGCGCAGGGATTTATATTGAGCCTTCTTGTCAGCATAAGAGTGTGGAATCTGATCGTCATTG CAAGCGTTCAAAGAGTTTAATCTATTGTGCTGCCAAGCTCCTTCAATGTTTAAGTGAAGCCAGATTCTTGAGAATAAATACCTGGCCTATTGAGATTTTC TTTATGCAAAATGATTATCCCATAGTTTTCAAGAATCTACAAAACTTGGTTCTGCTATCTGATGGTTCACTTGCTGACCAAATTCCATTCATCGCCTCCT TCCTCAAGGGAATGCCTAACCTAAAGAAACTAATAATAAGTTGTTTCGATACATCCCATGAGCTTTCTGATCCAAATTTGATTAATTTCTTGGGCTTGAA GTCAAGGAGCTTTAATGTGACAGAAGTCAGTCGGGATTTGAAAATTGTAAAGATAGAAGCTGTTCAAGCTCAACAGTGCATGCAGAATGATGGCAGGAGA AGACTAAAGCTTTAG
AA sequence Show only first row Show all	>Potri.006G248600.1 pacid=42769726 polypeptide=Potri.006G248600.1.p locus=Potri.006G248600 ID=Potri.006G248600.1.v4.1 annot-version=v4.1 MDSPSKLMVMSSRRDTLIILASTRDILSSLPDQIIYHIFSFLGANDTARLGVVSKRFNQLCTSSPYLNFVADFDSDYSDPSCLRTRYTDFCSYVNKVLRW REKTGGGLQRLHVHWHSCKKRRFDIGETAVNSWVTIATKCGVEELDMLLHVDPWRGYSLPGCVYNCESLRALKLNLQMGRFNFRVAGWDWLKDLWLDSVT VEDIYFGQRISEWCKSLKRLTLEDVDGISGGLNMTTSSLEELTISGCDFAFTGGNFNISSSSFKTLTIYRCQFKAQRHVNLNCPSLENLTVHDSEFGKCF LCKISCESLEKLRVCGSSFLEACHFRIACPSVGQVMISSCRFAGTCVLNINSFSLQDLTVSECNFSSLGSALQYLPPVKDFQAVPRLRRHIIVKAANLEK LNISSSDEYSYEFPLKIDAPNLKVLWWAGDPVDFSFLKQDMFMSLTSAGIYIEPSCQHKSVESDRHCKRSKSLIYCAAKLLQCLSEARFLRINTWPIEIF FMQNDYPIVFKNLQNLVLLSDGSLADQIPFIASFLKGMPNLKKLIISCFDTSHELSDPNLINFLGLKSRSFNVTEVSRDLKIVKIEAVQAQQCMQNDGRR RLKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G248600 [exp]	0	1
AT1G52950			Nucleic acid-binding, OB-fold-...		Potri.001G165480 [exp]	3.46	0.7541
					Potri.011G125251 [exp]	3.60	0.8117
					Potri.018G077983 [exp]	3.87	0.7540
AT5G64220	CAMTA		Calmodulin-binding transcripti...		Potri.008G099733 [exp]	7.28	0.6870
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	25.80	0.6971
AT2G47680	C3HZnF		zinc finger (CCCH type) helica...		Potri.002G204750 [exp]	27.64	0.6221
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	28.12	0.7445
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.004G024200 [exp]	32.07	0.7144
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.019G125400 [exp]	38.52	0.7251
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Potri.013G161800 [exp]	41.78	0.7511	Pt-KAO2.1,CYP88A8

Compare expression of checked genes

Potri.006G248600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.