Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11330 427 / 5e-149 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032500 [exp] 589 / 0 AT5G11330 568 / 0.0 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008089 [exp] 407 / 2e-141 AT5G11330 483 / 1e-170 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10013121 [exp] 244 / 9e-79 AT5G11330 369 / 1e-127 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2) Lus10013122 [exp] 100 / 4e-26 AT5G11330 87 / 6e-22 FAD/NAD(P)-binding oxidoreductase family protein (.1), FAD/NAD(P)-binding oxidoreductase family protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G248800.1 pacid=42767662 polypeptide=Potri.006G248800.1.p locus=Potri.006G248800 ID=Potri.006G248800.1.v4.1 annot-version=v4.1 ATGTATTGGGCTTTTCTATCTATTGAGATCACCGAGGCACCGATAGCTTCTGTTTTTTTGCCCAACCATGCACCAGATGGAGAAAAGGAAGTCAGCAGGA TTCTGACAAGGGATGAGAATTTCAATTTCAGAGCTGCACATTGGGCTGATCTTCATGGTCTTTTATACAAGGCACTGCCAGAAGAAGTGTTCTTGTGGGG TCGTTTGTACCTTTGCTTCAGCACTTCTGAAGACAAAACCTCGGTTAAAGTTGAGGCTAAAGTTCTTCAAACTGAAGAGATTATTGAGATAAATGGGGAC TGGCTTGTTGCAGCAGATGGATGCCTCTCTTCAATTCGGAAGACATTTCTACCTGATCTCAAATTGAGGCTTATTGAGATTACTATGAACCTTTTGCATT TCATGATAATGTATTCAGGTTGCTGTGCCTGGAGAGGAGTTCTTGACTTTTCAGGAAATGGGAATTCAGAATCTATCTTGGGCATCCAAAGAGCGTACGC AGATCCTGGAAAATGCCTATACTTCGATCTAAACACTGGAAGTCACACTGGGCATTATGAACTCCTTAACAAAAGGCTCAATTGGATGTGGTATGTCCAT CAACCTGAGCCTGGACAGAAGGGAAATTCTGTGACCATGAAAGTAAGTAGTGACATGATAGAAAATATGTACCAAGAAGCAGAGAAAGTTTGGGGTCCTG AATTGGTGAGAGTCACGAGAGAAACAAAGGAGCCTTTCATAAATATCATATATGATTGTGATCCTCTTGAGCAAATCTTTTGGGACAACGTGGTATTGAT TGGAGATGCTTCTCACCCTACAACTCCTCTTGGAGTCAGAAGTACAAACATGTCAACTTTGGATGCAGCCGTTCTAGGCAAATGTATTGAGAAGTGGGGA GCAGAAAACATACCTTCAGCTCTTGAAGAATATCAGCGCATTAGGGTAACAGTCACTGCGAAACAAGTCCTGCATTTGCAGAGAGTGGGTCGAATCAAGC AAGGCTTAGCTCTTCCTGATCGTAAACTTTTTGATCCAATGACAGCAAGTGCAGAGGAAAGTGAAGAGCTTCAAAAGAAACATATGCCTTTCTTTGCAAG TGCTCCTTTGTCAGTTGATTGA
AA sequence Show only first row Show all	>Potri.006G248800.1 pacid=42767662 polypeptide=Potri.006G248800.1.p locus=Potri.006G248800 ID=Potri.006G248800.1.v4.1 annot-version=v4.1 MYWAFLSIEITEAPIASVFLPNHAPDGEKEVSRILTRDENFNFRAAHWADLHGLLYKALPEEVFLWGRLYLCFSTSEDKTSVKVEAKVLQTEEIIEINGD WLVAADGCLSSIRKTFLPDLKLRLIEITMNLLHFMIMYSGCCAWRGVLDFSGNGNSESILGIQRAYADPGKCLYFDLNTGSHTGHYELLNKRLNWMWYVH QPEPGQKGNSVTMKVSSDMIENMYQEAEKVWGPELVRVTRETKEPFINIIYDCDPLEQIFWDNVVLIGDASHPTTPLGVRSTNMSTLDAAVLGKCIEKWG AENIPSALEEYQRIRVTVTAKQVLHLQRVGRIKQGLALPDRKLFDPMTASAEESEELQKKHMPFFASAPLSVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11330			FAD/NAD(P)-binding oxidoreduct...		Potri.006G248800 [exp]	0	1
					Potri.001G443025 [exp]	4.47	0.8109
AT5G46940			Plant invertase/pectin methyle...		Potri.005G023201 [exp]	10.39	0.8304
AT2G06255		ELF4-L3	ELF4-like 3 (.1)		Potri.019G131700 [exp]	13.85	0.7905
AT1G15780			unknown protein		Potri.003G028401 [exp]	21.16	0.8077
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G218000 [exp]	22.22	0.7902
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076300 [exp]	24.67	0.7804
AT2G01350		QPT	quinolinate phoshoribosyltrans...		Potri.010G113500 [exp]	29.08	0.7978
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	29.84	0.7918
AT1G53440			Leucine-rich repeat transmembr...		Potri.011G072766 [exp]	36.12	0.7729
AT4G01040			Glycosyl hydrolase superfamily...		Potri.014G096700 [exp]	37.54	0.7075

Compare expression of checked genes

Potri.006G248800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.