Plant FIBer expression Database

Potri.006G249000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G25605 314 / 1e-110 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008087
[exp]
315 / 6e-111 AT2G25605 292 / 7e-102 unknown protein
PFAM info
Representative CDS sequence
>Potri.006G249000.1 pacid=42770081 polypeptide=Potri.006G249000.1.p locus=Potri.006G249000 ID=Potri.006G249000.1.v4.1 annot-version=v4.1
ATGTCGTTTTGTTCATCTATATCAACCCCACAGTCTCTGTCTCTCCTATCTAAAACCAAGCCCATCATCAATGGAGGAGACTACAAACTGGGCTCTCGCT
TTAGAGCTTCTGCTGATGTCCCTGATTTTCTCTCTGCAGATTGGCTTGAATCTCGAAGGAAGAAACCATTTGGCCCAAGATTAAATTTTAGTGCAGAAGA
AGCTGTTAATTGCCAGCTTGATGCATTGAAGTATAATGATCAACCTCGTCAAGATTATGGGATTGAGGTCATGTATAGGTTTGCTGGATTTGATCCTTTC
GAAAGGTCTACTTATTTTGGGCCATTTTTTGATTTAGGGCAGTTTGAAAGGTTTAGGAGGATTTTTCACCATTCGACATATCGAGTGTTGCTTGGTCACA
AGGAGAGGAAGATCTTGAGCAGTTTGTTCGTGAAAGAGAATCGATTCAAACAGAGGATATGGATTCGGGGGAATCGCCCTGAGGAGGAAGAAATATTTCA
ATTTACCATGGTTCAGAGAGTCGGTGGTTCATGGGATGGTTATTGGTTGACAGAGTCTCTTCTTCATGATGGAGATGCTTTTGCTGGTGGTTTGGCCTAC
TAA
AA sequence
>Potri.006G249000.1 pacid=42770081 polypeptide=Potri.006G249000.1.p locus=Potri.006G249000 ID=Potri.006G249000.1.v4.1 annot-version=v4.1
MSFCSSISTPQSLSLLSKTKPIINGGDYKLGSRFRASADVPDFLSADWLESRRKKPFGPRLNFSAEEAVNCQLDALKYNDQPRQDYGIEVMYRFAGFDPF
ERSTYFGPFFDLGQFERFRRIFHHSTYRVLLGHKERKILSSLFVKENRFKQRIWIRGNRPEEEEIFQFTMVQRVGGSWDGYWLTESLLHDGDAFAGGLAY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G25605 unknown protein Potri.006G249000
[exp]
0 1
AT1G68830 STN7 STT7 homolog STN7 (.1) Potri.008G116800
[exp]
9.64 0.9517
AT1G54520 unknown protein Potri.005G049500
[exp]
14.83 0.9459
AT3G62410 CP12-2 CP12 DOMAIN-CONTAINING PROTEIN... Potri.014G120700
[exp]
19.07 0.9434
AT5G18100 CSD3 copper/zinc superoxide dismuta... Potri.019G035800
[exp]
20.14 0.9208 CSD3.1
AT1G09130 ATP-dependent caseinolytic (Cl... Potri.013G017166
[exp]
20.49 0.9452
AT1G10830 Z-ISO1.2, Z-ISO... 15-cis-zeta-carotene isomerase... Potri.014G146900
[exp]
23.81 0.9409
AT4G22260 IM1, IM IMMUTANS, Alternative oxidase ... Potri.011G021800
[exp]
25.09 0.9403
AT1G02560 NCLPP5, NCLPP1,... NUCLEAR CLPP 5, NUCLEAR-ENCODE... Potri.014G119700
[exp]
28.63 0.9413
AT3G20230 Ribosomal L18p/L5e family prot... Potri.013G108700
[exp]
32.58 0.9413
AT4G04770 ABCI8, ATNAP1, ... LONG AFTER FR, ARABIDOPSIS THA... Potri.004G016900
[exp]
33.27 0.9406 Pt-LAF6.1

Potri.006G249000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.