Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25600 1065 / 0 AKT6, SPIK Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) AT2G26650 1042 / 0 AKT1, ATAKT1 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) AT4G32500 1023 / 0 AKT5 K+ transporter 5, K+ transporter 5, K+ transporter 5 (.1) AT5G46240 541 / 0 KAT1 potassium channel in Arabidopsis thaliana 1 (.1) AT4G18290 530 / 2e-177 KAT2 potassium channel in Arabidopsis thaliana 2 (.1) AT4G22200 516 / 7e-171 AKT3, AKT2/3 potassium transport 2/3 (.1) AT4G32650 431 / 1e-140 AtLKT1, KAT3, ATKC1 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) AT3G02850 357 / 8e-110 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G37500 348 / 2e-106 GORK gated outwardly-rectifying K+ channel, gated outwardly-rectifying K+ channel (.1) AT5G57940 69 / 2e-11 ATCNGC5 cyclic nucleotide gated channel 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031600 [exp] 1467 / 0 AT2G25600 1078 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Potri.018G071400 [exp] 1069 / 0 AT2G26650 1192 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.006G154600 [exp] 775 / 0 AT2G26650 816 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Potri.003G018800 [exp] 565 / 0 AT4G22200 1045 / 0.0 potassium transport 2/3 (.1) Potri.004G132200 [exp] 564 / 0 AT5G46240 913 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Potri.006G245000 [exp] 480 / 2e-159 AT4G32650 752 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.018G035500 [exp] 475 / 3e-157 AT4G32650 777 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.012G124944 [exp] 471 / 6e-156 AT4G32650 734 / 0.0 A. thaliana low-K+-tolerant 1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, potassium channel in Arabidopsis thaliana 3 (.1.2.3) Potri.017G135400 [exp] 358 / 4e-110 AT3G02850 1269 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002529 [exp] 1087 / 0 AT2G25600 1030 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10013115 [exp] 1077 / 0 AT2G25600 1036 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10019442 [exp] 1076 / 0 AT2G26650 1252 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10043298 [exp] 1070 / 0 AT2G26650 1250 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10033052 [exp] 1047 / 0 AT2G26650 1211 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10008082 [exp] 1021 / 0 AT2G25600 994 / 0.0 Shaker pollen inward K+ channel, Shaker pollen inward K+ channel (.1) Lus10017766 [exp] 601 / 0 AT2G26650 719 / 0.0 K+ transporter 1, K+ transporter 1, K+ transporter 1 (.1) Lus10019944 [exp] 544 / 0 AT4G22200 1111 / 0.0 potassium transport 2/3 (.1) Lus10028128 [exp] 535 / 6e-179 AT5G46240 827 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1) Lus10042831 [exp] 535 / 1e-178 AT5G46240 825 / 0.0 potassium channel in Arabidopsis thaliana 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF00027 [poplar] [flax] cNMP_binding Cyclic nucleotide-binding domain CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel CL0030 [poplar] [flax] PF11834 [poplar] [flax] KHA KHA, dimerisation domain of potassium ion channel CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13857 [poplar] [flax] Ank_5 Ankyrin repeats (many copies)
Representative CDS sequence Show only first row Show all	>Potri.006G249900.3 pacid=42767292 polypeptide=Potri.006G249900.3.p locus=Potri.006G249900 ID=Potri.006G249900.3.v4.1 annot-version=v4.1 ATGGTAATGACGAAGAAGAAAAGGGTGTTATTTTGTGGTGAAGAAGGAGGATTAGACAATGGAAGCTTTTACGGAAGTGCAGGAGGAAGTGAAGAAGGAA ATGGAATTCATGAGAAAGAATTTGAGCAATTGTCAAGAGATGATGCCAGCCGTTTTAGCCTTACTGATGAGATTCTTCCTTCTCTCGGCGCCACCGCTCG TAGCAACCGCCGTGTCCTTCTCCGTCGTTTCATTGTCTCTCCATTCGACCACCGCTACAGATTTTGGGTTACTTTCTTGGTATTTCTAGTTTTCTACACA GCATGGGTGTCTCCATTTGAATTTGGTTACCTTAGCAAACCCAGTGGGGGTTTAGCCATAGCAGATAATGTTGTCAATGGATTTTTTGCCATTGATATTA TTTTGACCTTCTTTGTTGCATACCTTGACAAAAATTCTTATCTATTAGTTGATGATCGAAAAAAGATTGCTTGGAGGTATGCAAGAACCTGGTTGGTTCT TGATGTTATCTCTACAATCCCATCTGAACTTGTCAGGGAAATACTGCCTCATAAATTCGAGTCATATGGGTACTTTAGTATGCTTCGCCTCTGGCGTCTC CGGCGAGTTAGTCTCTTTTTCTCAAGATTGGAAAAGGATAGGAAGTACAACTACTTTGCAGTTCGATTCTCGAAGCTCATATGTGTTACTCTATTTGTGG TTCACATGGCCGGTTGTTTGTTCTATCGTATAGCTGCATATTACAAGGATCCAAGTAAAACATGGATTGGGTCCGTTTGGGAAGATTTTCATACCGAGAG CTTGTGGGTTCGTTATGTCAAAGCCCTTTACTGGTCTATAACCACGCTCACTACCACTGGATATGGTGATTTGCATGCTGTTAATCACGATGAGATGGTA TTCGTCATGTTCTACATGATGTTTGATCTTGGACTGACATCGTATTTGATCGGAAACATGACCAATTTGGTTGTCCATGCGACCTTTCGAACCAGGCAAT TTAGAGATACTATCCAAGCTGTCTCAAGTTTTGCACAAAGGAACCACCTTCCTGTTCGGTTACAAGACCAAATGCTTGCTCATTTGAGTCTGAAGTTCAG AACGGATTCGGAGGGATTGCATCAACAAGAGACCATTGAGTCTCTTCCTAAGGCAATTCGATCAAGCATTTCTAACTATCTCTTTTATTCACTTGTGGAT AGAGTGTACTTGTTTCGTGGGGTATCAAATGACTTGCTCTTTCAATTGGTCACAGAGATGAAAGCTGAATACTTTCCACCCAAAGAAGATGTAATTTTGC AAAATGAAGCACCGACAGATTTGTATATATTGGTTACTGGTGCTGTGGAACTTATCATGCGGAGGAATGGAATAGAGCAGGTTGTTGGTGAGGCGGTGAC TGGAGATGTTGTTGGTGCGATTGGTCTGCTTTGTTACAGACCACAGTTATTCACAGTTAGAACCAAACGGTTGAGTCAGCTCCTACGTTTGAACCGAACT GCCTTTTTAAATATTGTCCAATCAAATGTTGGAGATGGGACAATAATCATGAACAACCTTCTTCAGTATTTGAAAGACTCGAATTTTCCAGAGATGGAAG GAATTCTGACGGACACAGAGCACATGCTGACTCAGGGAAGAATGGATTTGCCTCTTACATTGTGCTTTGCTGCAATGAGGGGTGACGATCTATTGTTGCG TCAGTTGCTGAAACAGGGTTTAGATCCGAATGAATTGGATGACAATGGACGAACAGCACTGCATATTGCGGCTTCAAATGGGAATGAGCACTGTGTAGTC CTACTTCTAGAGTATGGAGCAGATCCTAACATCAAAGATTCAGAAGGCAATGTTCCTGTGTGGGAAGCACTGCAAGGGAATCATAAAAATGTAATTAAAC TTCTCTCAGAAAATGGTGCAGCAATAACTTCTGGTGATGTGGGCCAATTTGCACTTACAGCTGTCGAGCAAAATAACATAGATTTGCTCGAGGAAATTGC CAAGTATGGTGGAGATGTAACACTGCCCGCAACCTGTGGGACCACTGCACTTCATACTGCAATCTCCGCAGGAAACACCGAAATGGTTAAGTTCATCTTA GACCAAGGAGCTGATGTTGATAAGCCAGATCTCCATGGATGGACACCAAGGGCTTTGGCTGATCATCAGGGCCAAGAGGAAATTCAAGGTTTGTTTGAAA ATTGGGTGACGGAAAATAAGAAAACAGTTCCCACAACTCCAAAGCATCTATCGGTTCCATATGGTGGGAAGTCCATTGCAAAGTATAATAGTGAACCTAC AATAGCTCCATTTTCTCCATCTTTGCATCATGATGTGGCGCCACCTCGAAGGAGAAGAGCAGACAATTTCCAAAACTCGCTTGTTGGGATGATGTCAGTT GCTAGTACTGGTGAGAATGGCATGATTTCATCTCCAGCCCGTTTTACAGGTTTCCTAAGTTCGAACTATCCTGCCAGAGTGACTCTCAGTTGTCCCGATA AGGGTGAAGTTGGTGGAAAACTTGTTGTATTACCAAAATCATTCCAAGAACTACTTGATATTGGTGCTAGAAAATTTGGATGCATTGCCACCAAGATTCT AACCAGAGAAGGTGCTGAAATTGAAGACATAGAACTCGTAAGAGATGGAGATCATCTTGTTCTTGTTCCCGGCACTGAAAGCTAA
AA sequence Show only first row Show all	>Potri.006G249900.3 pacid=42767292 polypeptide=Potri.006G249900.3.p locus=Potri.006G249900 ID=Potri.006G249900.3.v4.1 annot-version=v4.1 MVMTKKKRVLFCGEEGGLDNGSFYGSAGGSEEGNGIHEKEFEQLSRDDASRFSLTDEILPSLGATARSNRRVLLRRFIVSPFDHRYRFWVTFLVFLVFYT AWVSPFEFGYLSKPSGGLAIADNVVNGFFAIDIILTFFVAYLDKNSYLLVDDRKKIAWRYARTWLVLDVISTIPSELVREILPHKFESYGYFSMLRLWRL RRVSLFFSRLEKDRKYNYFAVRFSKLICVTLFVVHMAGCLFYRIAAYYKDPSKTWIGSVWEDFHTESLWVRYVKALYWSITTLTTTGYGDLHAVNHDEMV FVMFYMMFDLGLTSYLIGNMTNLVVHATFRTRQFRDTIQAVSSFAQRNHLPVRLQDQMLAHLSLKFRTDSEGLHQQETIESLPKAIRSSISNYLFYSLVD RVYLFRGVSNDLLFQLVTEMKAEYFPPKEDVILQNEAPTDLYILVTGAVELIMRRNGIEQVVGEAVTGDVVGAIGLLCYRPQLFTVRTKRLSQLLRLNRT AFLNIVQSNVGDGTIIMNNLLQYLKDSNFPEMEGILTDTEHMLTQGRMDLPLTLCFAAMRGDDLLLRQLLKQGLDPNELDDNGRTALHIAASNGNEHCVV LLLEYGADPNIKDSEGNVPVWEALQGNHKNVIKLLSENGAAITSGDVGQFALTAVEQNNIDLLEEIAKYGGDVTLPATCGTTALHTAISAGNTEMVKFIL DQGADVDKPDLHGWTPRALADHQGQEEIQGLFENWVTENKKTVPTTPKHLSVPYGGKSIAKYNSEPTIAPFSPSLHHDVAPPRRRRADNFQNSLVGMMSV ASTGENGMISSPARFTGFLSSNYPARVTLSCPDKGEVGGKLVVLPKSFQELLDIGARKFGCIATKILTREGAEIEDIELVRDGDHLVLVPGTES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25600		AKT6, SPIK	Shaker pollen inward K+ channe...		Potri.006G249900 [exp]	0	1
AT5G02750		SGR9	SHOOT GRAVITROPISM 9, RING/U-b...		Potri.016G082500 [exp]	2.82	0.8134
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.002G209795 [exp]	4.24	0.8403
AT4G02630			Protein kinase superfamily pro...		Potri.005G139500 [exp]	17.20	0.8400
					Potri.001G207600 [exp]	19.05	0.7788
AT1G45207			Remorin family protein (.2)		Potri.002G125200 [exp]	19.59	0.8164
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.008G178951 [exp]	22.22	0.8056
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.010G031800 [exp]	24.18	0.8129
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.006G216300 [exp]	27.45	0.7841
AT1G79670		WAKL22, RFO1	RESISTANCE TO FUSARIUM OXYSPOR...		Potri.001G040000 [exp]	28.24	0.8120
AT1G20670			DNA-binding bromodomain-contai...		Potri.016G141400 [exp]	32.71	0.8093

Compare expression of checked genes

Potri.006G249900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.