Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11420 598 / 0 Protein of unknown function, DUF642 (.1) AT5G25460 585 / 0 Protein of unknown function, DUF642 (.1) AT4G32460 567 / 0 Protein of unknown function, DUF642 (.1.2) AT1G80240 479 / 3e-170 Protein of unknown function, DUF642 (.1) AT3G08030 405 / 2e-141 Protein of unknown function, DUF642 (.1.2) AT2G41800 402 / 7e-140 Protein of unknown function, DUF642 (.1) AT2G41810 400 / 5e-139 Protein of unknown function, DUF642 (.1) AT2G34510 359 / 1e-122 Protein of unknown function, DUF642 (.1) AT1G29980 355 / 5e-121 Protein of unknown function, DUF642 (.1.2) AT5G14150 155 / 2e-43 Protein of unknown function, DUF642 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G031100 [exp] 686 / 0 AT5G11420 600 / 0.0 Protein of unknown function, DUF642 (.1) Potri.003G059800 [exp] 521 / 0 AT5G25460 513 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G174400 [exp] 520 / 0 AT5G25460 507 / 0.0 Protein of unknown function, DUF642 (.1) Potri.001G263900 [exp] 439 / 1e-154 AT3G08030 515 / 0.0 Protein of unknown function, DUF642 (.1.2) Potri.009G058800 [exp] 434 / 2e-152 AT3G08030 498 / 9e-178 Protein of unknown function, DUF642 (.1.2) Potri.006G050400 [exp] 421 / 2e-147 AT2G41810 521 / 0.0 Protein of unknown function, DUF642 (.1) Potri.006G050300 [exp] 417 / 5e-146 AT2G41810 530 / 0.0 Protein of unknown function, DUF642 (.1) Potri.016G056100 [exp] 406 / 2e-141 AT2G41810 520 / 0.0 Protein of unknown function, DUF642 (.1) Potri.011G087500 [exp] 363 / 2e-124 AT1G29980 578 / 0.0 Protein of unknown function, DUF642 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013112 [exp] 620 / 0 AT5G11420 606 / 0.0 Protein of unknown function, DUF642 (.1) Lus10008080 [exp] 613 / 0 AT5G11420 604 / 0.0 Protein of unknown function, DUF642 (.1) Lus10005474 [exp] 590 / 0 AT5G11420 581 / 0.0 Protein of unknown function, DUF642 (.1) Lus10025753 [exp] 442 / 1e-155 AT5G11420 453 / 8e-160 Protein of unknown function, DUF642 (.1) Lus10029501 [exp] 441 / 3e-155 AT3G08030 537 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10035910 [exp] 441 / 1e-154 AT5G11420 452 / 9e-159 Protein of unknown function, DUF642 (.1) Lus10039602 [exp] 438 / 5e-154 AT3G08030 530 / 0.0 Protein of unknown function, DUF642 (.1.2) Lus10016394 [exp] 399 / 3e-138 AT3G08030 469 / 2e-166 Protein of unknown function, DUF642 (.1.2) Lus10016393 [exp] 397 / 6e-138 AT3G08030 490 / 1e-174 Protein of unknown function, DUF642 (.1.2) Lus10029502 [exp] 385 / 3e-133 AT3G08030 475 / 1e-168 Protein of unknown function, DUF642 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF04862 [poplar] [flax] DUF642 Protein of unknown function (DUF642)
Representative CDS sequence Show only first row Show all	>Potri.006G250100.2 pacid=42769159 polypeptide=Potri.006G250100.2.p locus=Potri.006G250100 ID=Potri.006G250100.2.v4.1 annot-version=v4.1 ATGAGAGGAGCCATGCTTCCATTGTCGGTGCTACTGTTAGCCACTTGCCACTTTGCCTTTTCTATCAGAGATGGACTGGTAGAAAATGGGAACTTCGAGG TTGGCCCGAAGCCATCGGAGTTGAAAGGAACAGAGATGATCGGACGCTATGCATTACCAAAATGGGAAATTTCCGGCTTCGTCGAGTACATCAAAGCAGG CCAAAAACAAGGGGACATGTTGCTGGTAGTACCAGAGGGAGCCTATGCAGTCCGGCTTGGAAATGAGGCATCAATCAAGCAAGTTCTAAATGTTACAAAG GGAATGTACTATTCCATCACATTTAGCGCAGCTAGAACCTGTGCTCAAGAGGAAGAATTGAACATATCGATTTCTCCTGAGTGGGGCGTGCTACCAATGC AAACAATGTACAGTAGCAATGGATGGGACTCGTATGCTTGGGCATTTAAAGCCTTGCTTGATATCGTTGAGCTTGTTGTTCACAATCCAGGAGTTGAAGA AGATCCTGCTTGCGGCCCGCTCATTGATTCAGTGGCCATTAAAGCTTTATATCCTCCTAGACCAACAAATAAGAACCTAGTGAAAAATGGGGGTTTCGAA GAAGGTCCATATTTGTTACCTAACACATCCTGGGGTGTCCTGATCCCACCCAACATTGAAGATAAGCACTCTCCCCTCCCTGGCTGGATGGTTGAATCCC TTAAAGCAGTTAAATTCATTGATGTAGAACATTTTTCGGTGCCACAAGGACGGCGTGCCATAGAACTTGTAGCAGGCAAAGAGAGTGCCATTGCACAGGT AGTCCGTACCATAATCGGCAAAACCTATACCCTCTCATTTGCAGTAGGAGATGCGAGCAATTCATGTCAAGGGTCAATGGTTGTCGAGGCGTTCGCCGGC AAGGACACAGTCAAAGTTCCTTATGAATCCAAGGGCAAAGGTGGGTTTAAGCGAGCAGTGCTTAAATTTGTTGCTGCTTCTAGCAGAACAAGAATAATGT TCTACAGCACATTTTACACCATGAGGAGTGATGACTTTTCTTCTCTATGCGGACCTGTTGTCGATGATGTGAAGCTGTTGAGTCTCCGTGGAACATGA
AA sequence Show only first row Show all	>Potri.006G250100.2 pacid=42769159 polypeptide=Potri.006G250100.2.p locus=Potri.006G250100 ID=Potri.006G250100.2.v4.1 annot-version=v4.1 MRGAMLPLSVLLLATCHFAFSIRDGLVENGNFEVGPKPSELKGTEMIGRYALPKWEISGFVEYIKAGQKQGDMLLVVPEGAYAVRLGNEASIKQVLNVTK GMYYSITFSAARTCAQEEELNISISPEWGVLPMQTMYSSNGWDSYAWAFKALLDIVELVVHNPGVEEDPACGPLIDSVAIKALYPPRPTNKNLVKNGGFE EGPYLLPNTSWGVLIPPNIEDKHSPLPGWMVESLKAVKFIDVEHFSVPQGRRAIELVAGKESAIAQVVRTIIGKTYTLSFAVGDASNSCQGSMVVEAFAG KDTVKVPYESKGKGGFKRAVLKFVAASSRTRIMFYSTFYTMRSDDFSSLCGPVVDDVKLLSLRGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11420			Protein of unknown function, D...		Potri.006G250100 [exp]	0	1
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067800 [exp]	1.41	0.9852	ACTI.3
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.014G104300 [exp]	2.44	0.9804
AT2G01505		CLE16	CLAVATA3/ESR-RELATED 16 (.1)		Potri.010G111200 [exp]	4.89	0.9827
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083100 [exp]	8.48	0.9831
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	11.61	0.9728
AT4G08910			unknown protein		Potri.002G231400 [exp]	12.64	0.9810
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	13.26	0.9598	Pt-CYP86.6
AT2G18969			unknown protein		Potri.018G090200 [exp]	14.00	0.9804
AT1G29450			SAUR-like auxin-responsive pro...		Potri.009G141150 [exp]	14.07	0.9701
AT1G78170			unknown protein		Potri.005G165300 [exp]	16.43	0.9673

Compare expression of checked genes

Potri.006G250100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.