Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15980 462 / 3e-156 Coatomer, beta' subunit (.1.2.3.4.5) AT1G52360 462 / 8e-156 Coatomer, beta' subunit (.1.2) AT1G79990 457 / 3e-154 structural molecules (.1.2.3.4.5) AT2G21390 192 / 6e-54 Coatomer, alpha subunit (.1) AT1G62020 188 / 1e-52 Coatomer, alpha subunit (.1) AT3G49660 97 / 2e-22 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 95 / 7e-21 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 92 / 7e-20 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 89 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT1G49040 88 / 1e-18 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056300 [exp] 461 / 2e-155 AT1G52360 1653 / 0.0 Coatomer, beta' subunit (.1.2) Potri.001G179200 [exp] 459 / 1e-154 AT1G52360 1618 / 0.0 Coatomer, beta' subunit (.1.2) Potri.012G074800 [exp] 178 / 5e-49 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.015G069700 [exp] 177 / 6e-49 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.007G009500 [exp] 95 / 8e-22 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G263400 [exp] 92 / 4e-20 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.005G148500 [exp] 90 / 5e-20 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 92 / 6e-20 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G255400 [exp] 92 / 8e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033092 [exp] 444 / 9e-149 AT1G52360 1481 / 0.0 Coatomer, beta' subunit (.1.2) Lus10026094 [exp] 399 / 1e-139 AT3G15980 406 / 1e-135 Coatomer, beta' subunit (.1.2.3.4.5) Lus10002324 [exp] 400 / 2e-139 AT3G15980 397 / 7e-132 Coatomer, beta' subunit (.1.2.3.4.5) Lus10037525 [exp] 390 / 1e-135 AT1G52360 513 / 3e-176 Coatomer, beta' subunit (.1.2) Lus10011467 [exp] 366 / 1e-118 AT1G52360 1505 / 0.0 Coatomer, beta' subunit (.1.2) Lus10037538 [exp] 183 / 3e-51 AT2G21390 1402 / 0.0 Coatomer, alpha subunit (.1) Lus10011454 [exp] 182 / 3e-50 AT1G62020 2098 / 0.0 Coatomer, alpha subunit (.1) Lus10025780 [exp] 179 / 2e-49 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10040752 [exp] 176 / 2e-48 AT1G62020 2133 / 0.0 Coatomer, alpha subunit (.1) Lus10016481 [exp] 176 / 2e-48 AT1G62020 2130 / 0.0 Coatomer, alpha subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.006G250200.1 pacid=42770298 polypeptide=Potri.006G250200.1.p locus=Potri.006G250200 ID=Potri.006G250200.1.v4.1 annot-version=v4.1 ATGGCAAAGGGCATAGCAGATGACAACACGAGAAGAATCGCCCCAAGGTCCAATTTAACTTATGTGTTGAATGGCAAGCTTAAGCATTTAATTTCCTTAA CTGCGAAGGATCCCCAGGTATACATATATGGAGCAGCTTCCCTCTCTTCTCTATCATTCCAACTATCAAGCAGATTTCTCTTCAAGCCATTGCCGTCTTT AGCCCATATCAACTGTGAAAGAAAGAAAGAAATGGCTCTGAAATTGACAATTGAGCAAGAATTTTCACAATTATCTGAAAGGGTGAAATCTCTTGATCTA CATCCAACACGACCATGGATTCTAACAAGCTTGTATTCAGGAACTGTGTGTATTTGGAACTACCAGACACAGACCATGGAGAAGTCTTTTAAGGTCACAG AATCACCAGTAAGGTCAGCAAAGTTTATTGCAAGAAAGCAATGGATTGTAACTGGATCGGATGACAGATTCATCCGCGTATACAATTATGAAACAACGGA GTTGGTCAAAGAGTTTGAGGCACACAGCGATTACATTAGGGGTGTGCTCGTCCACCCCACCTTGCCATGTGTGCTCTCGTCTTCCGATGACATACTTATA AAGATGTGGAATTGGGAGAAGGGATGGGAGTGCGCTCAGACCTTTGAAGGACATTCACATTATGTAATGCAAGTCGTGTTCGATCCAAAAGATACCAGCA TCTTTGCAAGTGCATCACTTGATGCCACCGTGAAGATTTGGAATCTTAATTCTCCTACTCCTGTTGCTACACTAAATGGTCATTCCAAAGGCGTAAATTG TATCGATTTCTTCATGCGTGGTGACAAACTTTATCTATTGACTGGTTCTGATGATTTTACTGCCAAGGTGTGGCACTACGAAACAAAAAGTTGTGTCCAT ACACTAGAAGGTCATACCCACAACATCACTTCATGCTGTGTTCATCCACGGCTTCCCATCATAATCACTACTTCCGAGGATAATACTATCCGTCTATGGG ATGCAACAACTTACCGACTCGAGAACACATTGGATTATGGTCTTCAAAGAGTTTGGGCAGTTGGATGCAAGCAAGAGTCATGCCAAGTTGCATTTGGTTG TGACAATGGAACCACTATGCTCAAAGTAGCTGTTGCAGACGCAGGGACAACACAGTGA
AA sequence Show only first row Show all	>Potri.006G250200.1 pacid=42770298 polypeptide=Potri.006G250200.1.p locus=Potri.006G250200 ID=Potri.006G250200.1.v4.1 annot-version=v4.1 MAKGIADDNTRRIAPRSNLTYVLNGKLKHLISLTAKDPQVYIYGAASLSSLSFQLSSRFLFKPLPSLAHINCERKKEMALKLTIEQEFSQLSERVKSLDL HPTRPWILTSLYSGTVCIWNYQTQTMEKSFKVTESPVRSAKFIARKQWIVTGSDDRFIRVYNYETTELVKEFEAHSDYIRGVLVHPTLPCVLSSSDDILI KMWNWEKGWECAQTFEGHSHYVMQVVFDPKDTSIFASASLDATVKIWNLNSPTPVATLNGHSKGVNCIDFFMRGDKLYLLTGSDDFTAKVWHYETKSCVH TLEGHTHNITSCCVHPRLPIIITTSEDNTIRLWDATTYRLENTLDYGLQRVWAVGCKQESCQVAFGCDNGTTMLKVAVADAGTTQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G52360			Coatomer, beta' subunit (.1.2)		Potri.006G250200 [exp]	0	1
AT1G23420	YABBY	INO, YAB4	INNER NO OUTER, Plant-specific...		Potri.008G189000 [exp]	2.00	0.9861
					Potri.005G149001 [exp]	2.82	0.9861
AT5G10625			unknown protein		Potri.006G276100 [exp]	4.47	0.9708
					Potri.004G194250 [exp]	4.47	0.9773
AT5G13200			GRAM domain family protein (.1...		Potri.003G165400 [exp]	6.92	0.9379
					Potri.015G030750 [exp]	8.36	0.8898
AT3G12410			Polynucleotidyl transferase, r...		Potri.002G185500 [exp]	8.48	0.9182
AT5G66580			unknown protein		Potri.009G110700 [exp]	9.53	0.8901
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.005G098700 [exp]	12.48	0.8427
AT2G02240		MEE66	maternal effect embryo arrest ...		Potri.006G267000 [exp]	12.64	0.8612

Compare expression of checked genes

Potri.006G250200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.