Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RAN1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55190 411 / 2e-148 RAN3, ATRAN3 RAN GTPase 3 (.1) AT5G20010 408 / 7e-147 ATRAN1, RAN-1 ARABIDOPSIS THALIANA RAS-RELATED NUCLEAR PROTEIN, RAS-related nuclear protein-1 (.1) AT5G20020 400 / 5e-144 RAN2 RAS-related GTP-binding nuclear protein 2 (.1) AT5G55080 306 / 2e-106 ATRAN4 ras-related nuclear protein 4 (.1) AT4G39890 107 / 2e-28 AtRABH1c RAB GTPase homolog H1C (.1) AT4G19640 100 / 3e-26 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT2G44610 100 / 4e-26 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G18430 100 / 6e-26 AtRABA1e RAB GTPase homolog A1E (.1) AT5G45130 100 / 7e-26 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT1G07410 100 / 8e-26 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G250300 [exp] 412 / 1e-148 AT5G55190 424 / 4e-153 RAN GTPase 3 (.1) Potri.018G030900 [exp] 409 / 2e-147 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.018G030700 [exp] 409 / 2e-147 AT5G55190 424 / 3e-153 RAN GTPase 3 (.1) Potri.019G092500 [exp] 102 / 9e-27 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.003G086700 [exp] 102 / 1e-26 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 101 / 2e-26 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.005G073000 [exp] 101 / 3e-26 AT5G65270 402 / 1e-144 RAB GTPase homolog A4A (.1) Potri.013G123600 [exp] 101 / 3e-26 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.010G197200 [exp] 100 / 5e-26 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019420 [exp] 403 / 3e-143 AT5G55190 443 / 8e-159 RAN GTPase 3 (.1) Lus10019441 [exp] 394 / 3e-141 AT5G55190 434 / 2e-157 RAN GTPase 3 (.1) Lus10043297 [exp] 390 / 1e-139 AT5G55190 430 / 1e-155 RAN GTPase 3 (.1) Lus10043276 [exp] 387 / 1e-136 AT5G55190 428 / 9e-153 RAN GTPase 3 (.1) Lus10025432 [exp] 102 / 8e-27 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10015297 [exp] 101 / 2e-26 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10040255 [exp] 100 / 5e-26 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10004687 [exp] 100 / 5e-26 AT1G07410 363 / 2e-129 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10001026 [exp] 100 / 9e-26 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10017679 [exp] 100 / 1e-25 AT5G60860 426 / 4e-154 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.006G250400.2 pacid=42767929 polypeptide=Potri.006G250400.2.p locus=Potri.006G250400 ID=Potri.006G250400.2.v4.1 annot-version=v4.1 ATGGCTTTGCCGAATCAGCAAACTGTTGATTATCCAAGCTTCAAGCTTGTTATTGTTGGTGATGGTGGCACAGGGAAAACAACATTTGTGAAAAGGCATC TTACTGGCGAGTTCGAGAAGAAATATGAGCCAACTATTGGTGTGGAAGTTCATCCTTTGGATTTCTTCACTAACTGTGGAAAAATTAGATTCTATTGCTG GGATACAGCTGGTCAAGAGAAGTTTGGTGGTCTCAGAGATGGATATTACATCCATGGACAGTGTGCGATCATCATGTTCGATGTTACTGCTCGTTTGACA TATAAGAATGTCCCTACATGGCATCGGGATCTTTGCCGGGTTTGTGAGAACATTCCTATTGTTCTTTGTGGAAACAAGGTTGATGTGAAGAACAGGCAGG TGAAGGCAAAGCAAGTCACTTTCCACCGTAAGAAGAACTTGCAGTACTATGAAATTTCAGCAAAGAGCAATTACAACTTTGAGAAGCCCTTCCTGTACCT TGCCAGAAAGCTTGCTGGGGATCCCAATTTGCATTTTGTCGAGTCTCCTGCCCTGGCTCCCCCGGAAGTTACAATTGATCTTGCAGCACAGGCACAGCAC GAGGCTGAGCTCGCTGCTGCAGTTAGTCAACCTCTTCCAGATGATGATGATGATGTATTCGATTAA
AA sequence Show only first row Show all	>Potri.006G250400.2 pacid=42767929 polypeptide=Potri.006G250400.2.p locus=Potri.006G250400 ID=Potri.006G250400.2.v4.1 annot-version=v4.1 MALPNQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLT YKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVTIDLAAQAQH EAELAAAVSQPLPDDDDDVFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.006G250400 [exp]	0	1	Pt-RAN1.1
AT4G29340		PRF4	profilin 4 (.1)		Potri.018G057600 [exp]	8.94	0.8218	PRO1.3
AT1G79550		PGK	phosphoglycerate kinase (.1.2)		Potri.010G171600 [exp]	9.43	0.8308	PGK.1
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	16.43	0.7707
AT1G43890		ATRAB-C1, RAB18...	RAB GTPASE HOMOLOG 18-1, ARABI...		Potri.007G105500 [exp]	25.80	0.8008	Pt-RAB1.7
AT1G30890			Integral membrane HRF1 family ...		Potri.017G028425 [exp]	36.40	0.8060
AT1G47640			unknown protein		Potri.014G037100 [exp]	38.49	0.7672
AT1G01910			P-loop containing nucleoside t...		Potri.002G152500 [exp]	39.42	0.7653
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007300 [exp]	41.68	0.7939
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.013G005600 [exp]	51.84	0.7701
AT4G32690		ATGLB3, GLB3	ARABIDOPSIS HEMOGLOBIN 3, hemo...		Potri.006G244300 [exp]	55.49	0.7432	GLB3.1

Compare expression of checked genes

Potri.006G250400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.