Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54980 782 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G39230 756 / 0 LOJ LATERAL ORGAN JUNCTION (.1) AT5G61990 329 / 1e-98 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 325 / 1e-97 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 300 / 1e-89 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 291 / 8e-88 RPF2 rna processing factor 2 (.1) AT1G63080 288 / 7e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65560 295 / 1e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62910 288 / 2e-86 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 284 / 4e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105400 [exp] 408 / 2e-127 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G236800 [exp] 330 / 1e-99 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 312 / 6e-95 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G040200 [exp] 318 / 9e-95 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G105700 [exp] 315 / 1e-94 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.001G368700 [exp] 317 / 6e-93 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 306 / 4e-92 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G069600 [exp] 304 / 2e-91 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G046000 [exp] 298 / 1e-89 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019524 [exp] 957 / 0 AT3G54980 716 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 330 / 3e-100 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 326 / 7e-98 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008185 [exp] 322 / 4e-96 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 320 / 1e-95 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 308 / 8e-90 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10042529 [exp] 299 / 5e-87 AT5G65560 498 / 1e-160 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043366 [exp] 281 / 9e-87 AT3G54980 290 / 2e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010407 [exp] 295 / 1e-86 AT5G59900 981 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10043417 [exp] 290 / 1e-84 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.006G250700.2 pacid=42767933 polypeptide=Potri.006G250700.2.p locus=Potri.006G250700 ID=Potri.006G250700.2.v4.1 annot-version=v4.1 ATGAGATCACCAATTTCTTCATCAATCCCTCACTTCACTCTCCGCTCAATCAAAAGCCCAAAAACCCTCTCTTCACAACCTGAACTCCCCAATATCCCCA TCTCAGAAACCCCACTTTCCCAGAATCCCCATCCAAACACCAATTTCCCAGGAAAATCCGCACCAACGTCGCAAGATTCATTTTTGACACAAACCCAATA CATAGACACCCTTCTAAACCACCAAAATGATCCGCAATCAGCTCTTAGTTACTTCACTTGGGCTAGTCAAAAGAGAGGGCTTATCAAAAGCGTTGATGCA TTATGTGTTTTGCTTCACATTTTGACTAAGTCTACAGAGACTTGTGGAAAGGCTAGGAATCTGCTTAATCGATTCGCTTCGGATGATTGGGGACCCGTGC CTAGTGTTGTTGTTGCTAGGCTAATTGAGAGTTCAAGAAGGTTGGATTTTGAATCTGATTCTCGGGTTTTTAATTACCTGTTGAATAGTTATGTTAAAAC TAAGAGGATTAACGATGCTGTTGACTGTTTTAATTCATTGATTGAGAAAGATATAGTTCCTTGTCTTACTGTCATGAATATATTTTTGAGTGAATTAGTT AAGAATAATATGATTCGTGAGGCGCGGGATGTGTATAATAAGATGGCTTCGAAAGGGGTTAAAGGTGACTGTGCCACAATTAGTGTGATGATTCGTGCAT CCATGAGAGAAGGAAAATTAGAGGAGGCAGAGGGGTGGTTTAGAGAGGCAAAAAATAAAGGAGTAGAGCTTGATGCCAGGGCCTATAGTATTGTTATTGA GGCTGTTTGCAAGAAACCTGATTCTGTTGCAGCACTTGGGTTGTTGAGGGAGATGAGAGATAAGGGGTGGGTGCCGCATGAGGTCATATTTACTCGGGTT ATTGGGGTTTGTATGAAGCAAGGAAAAATGTTGGAAGCAGTGAAAGTTAAGGGGGAGATGTTGAGTTGTGGGAAGCCAATGAATGTGGTGGTGGCAACGA CTTTGATGAAGGGTTATTGCAAGCAAGGTGACTTGGATAGTGCTCTAGAATTGTTTGATAAAATGAATGAGAATGGAATTTGTCCAAACAATGTTACATA TGCAGTTATCATTGAATGGTGCTGTAAGAATGGGAATATGGATAAGGCTTATGAGATTTACAACCAAATGAAAAACAAGGATATCTCTCCTACTGTCTTC AATGTGAATTCCTTGATTCGGGGATACTTGAAGGCACGGTCACCTGAAGAGGCATCCAAGCTGTTTGATGAGGCAGTTGCATGTGGTATTGCTAATGTCT TCACTTATAATTCTCTTTTATCATGGTTATGCAAGGAGGGTAAGATGAGTGAAGCTTGTAGTATTTGGGAAAAGATGGTGAGAAAAGGTGTCCGACCCTC TGTAGTTTCTTACAACAACATGATACTTGGCCACTGCCAACAAGGCGACATGGATTCAGCAAATGGTGTGTTTGTGGAGATGCTTGAAAAGGGTTTAAAA CCTAATCTGATCACATATTCTGTTTTGATGGATGGCTATTTCAAAAAAGGTGACACTGAATATGCCTTTGGCTTGTATGATCGAATGCGAGGTGAAAATA TTGCCCCATCAGATTTCACTTGCAATATTATAATCAACGGTTTGTGCAAAGCTGGTCGCACATCTGAGTCACAGGATAGGTTGAAGAAGTTGGTTCAGGA GGGTTTCATTCCCACCTGCATGACATACAACTGTATTATAGATGGATTTGTAAAGGAGGGCTCTGTCAACTCCGCCTTGGCTGTTTATACAGAGATGTGC AAAATTGGAGTATCTCCAAACGTCTTCACTTACACTAACTTGATTAATGGGTTTTGCAAGAGCAATAATATGGATCTTGCCTTGAAGGTGATGGATGAGA TGAAAAACAAGGGTATTGAGCTGGATGTTACCGTATATTGTGCTCTGATTGATGGATTTTGCAGAAAAGGAGACATGGTAAATGCAAGCCAGCTTTTATC TGAACTCCAAGAAGTTGGGTTATCTCCAAATAAAGTAGTCTACAGTTCCATGATAAGTGGCTTCAGGAAGCTCCAGAATATGGAAGCAGCGCTGCATTTG CACAAGAGAATGATAAATGAGGGGATTCCTTGTGATTTACAAATTTACACGACGCTGATTTCTGGATTGCTAAAAGAGGGTAAATTACTCTTTGCTTCAG AACTTTATGCAGAGATGCTTGCTAAGGGCATCATGCCTGATTTAATAACTTATAGTGTTCTGATACACGGTCTTTGTAATAAAGGACAGCTAGAGAATGC ACAGAAAATTTTGGAAGATATGGATAGGAAATGTATGACCCCCACTGTCTTCATATATAATACGCTGATTACTGGACACTTTAAAGAGGGCAATCTACAA GAGGCTTTTAGACTGCATAATGAGATGCTCGACAAAGGTCTTGTTCCTGATGATACTACTTATGATATTCTTGTAAATGGAAAAGTCAAAGATGGAAATC TCTTTTCCGGAGCTTCAAGTGCTTGA
AA sequence Show only first row Show all	>Potri.006G250700.2 pacid=42767933 polypeptide=Potri.006G250700.2.p locus=Potri.006G250700 ID=Potri.006G250700.2.v4.1 annot-version=v4.1 MRSPISSSIPHFTLRSIKSPKTLSSQPELPNIPISETPLSQNPHPNTNFPGKSAPTSQDSFLTQTQYIDTLLNHQNDPQSALSYFTWASQKRGLIKSVDA LCVLLHILTKSTETCGKARNLLNRFASDDWGPVPSVVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELV KNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRV IGVCMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVF NVNSLIRGYLKARSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLK PNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMC KIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHL HKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEGNLQ EAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNLFSGASSA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G54980			Pentatricopeptide repeat (PPR)...		Potri.006G250700 [exp]	0	1
AT1G54380			spliceosome protein-related (....		Potri.017G036200 [exp]	5.29	0.7550
AT5G47680		AtTRM, TRM10	tRNA modification 10, unknown ...		Potri.006G004900 [exp]	7.14	0.7957
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.005G075000 [exp]	11.91	0.7997
AT3G58110			unknown protein		Potri.019G091700 [exp]	14.89	0.7885
AT2G35540			DNAJ heat shock N-terminal dom...		Potri.003G097800 [exp]	26.83	0.7823
					Potri.003G148601 [exp]	29.15	0.7912
AT5G48610			unknown protein		Potri.017G058701 [exp]	30.46	0.7921
AT1G75335			unknown protein		Potri.013G126701 [exp]	38.47	0.7832
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.004G040000 [exp]	40.97	0.7609
AT3G24080			KRR1 family protein (.1.2)		Potri.001G125200 [exp]	40.98	0.7748

Compare expression of checked genes

Potri.006G250700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.