Plant FIBer expression Database

Potri.006G250800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25480 529 / 0 AtDNMT2, DNMT2 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10026955
[exp]
535 / 0 AT5G25480 506 / 3e-180 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
Lus10020155
[exp]
459 / 7e-162 AT5G25480 428 / 4e-150 DNA METHYLTRANSFERASE 2, DNA methyltransferase-2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF00145 DNA_methylase C-5 cytosine-specific DNA methylase
Representative CDS sequence
>Potri.006G250800.8 pacid=42768940 polypeptide=Potri.006G250800.8.p locus=Potri.006G250800 ID=Potri.006G250800.8.v4.1 annot-version=v4.1
ATGGAGGAGAAGAAGGGTCTTCTACCCAAAAAAGAAGAAGAGCCATGGCGAGTCCTGGAATTCTACAGTGGTATTGGTGGCATGAGATATTCACTTATGA
AGGCTGGTGTCAATGCAAAAGTAGTGGAAGCTTTTGACATAAATGACAAAGCTAATGATGTTTATGAATACAATTTTGGCCACCGTCCTTATCAGGGTAA
TATTGAGACTCTGACGGCTGCTGATCTTGATAACTATGGGGCACACACGTGGCTTCTTTCACCACCTTGTCAACCCTACACTCGACAAGGTCTTCAAAAG
CAATCTGGTGATGCTCGAGCGTTTTCTTTTCTCAAGATTCTTGAACTTATTCCTCATACTAAGCAACCTCCAAATATGTTGTTTGTGGAAAATGTTGTTG
GATTTGAGACTTCAGATACACGTGCAAAAATGATAGAGATATTAGCAAGTTCTGAATATATTACACAAGAGTTTATATTGAGCCCACTGCAGTTTGGTGT
GCCTTATTCCAGGCCACGTTATTTTTGCTTGGCAAAAAGAAAGCCTTTATCATTTCACCACGAAGTCTGCAATAACAAATTGCTTTGGTCTCCCAGTCCA
TTGTTCGAGCATAATGAAAATAATGTAACAGATGGATGGGACCAACCACCAGTGAATTGGGATACTTTGATCCATTCTTGTGAGCCAGTTGAGAGGTTTC
TTGAGTTCAAGAGCTCCAGCAACCGAGTAACTGGAGGAACTGGAACTGATGTTTCAGCGGATTGTTCTGGAGCTTTGGAGAACATCGATGAAAGAAATCT
TAATACAATGTCCCAGTATATTGTTCCATTAAGCTTGATTGAGAGGTGGGAAAGTGCAATGGACATTGTCTATCCGGATTCGAAGCGATGCTGTTGTTTT
ACTAAGAGTTATTATAGATACGTGAAAGGCACTGGATCCCTCTTGGCTACTATCCAGCCAAACATCAAGGGAAAAGAATCTTCGTTGAAGAAGCAAGGGC
TTAGATATTTTACCCCTAGGGAAGTCGCTAATTTGCATTCGTTCCCTGATGATTTTCAGTTCCCAGAGGCAATAAGCCTTAGACAATGTTATGCATTATT
GGGAAACAGTTTAAGCGTAGCAGTGGTTGCGCCCTTACTCCGCTATCTATTTTCTCAACAATCATGA
AA sequence
>Potri.006G250800.8 pacid=42768940 polypeptide=Potri.006G250800.8.p locus=Potri.006G250800 ID=Potri.006G250800.8.v4.1 annot-version=v4.1
MEEKKGLLPKKEEEPWRVLEFYSGIGGMRYSLMKAGVNAKVVEAFDINDKANDVYEYNFGHRPYQGNIETLTAADLDNYGAHTWLLSPPCQPYTRQGLQK
QSGDARAFSFLKILELIPHTKQPPNMLFVENVVGFETSDTRAKMIEILASSEYITQEFILSPLQFGVPYSRPRYFCLAKRKPLSFHHEVCNNKLLWSPSP
LFEHNENNVTDGWDQPPVNWDTLIHSCEPVERFLEFKSSSNRVTGGTGTDVSADCSGALENIDERNLNTMSQYIVPLSLIERWESAMDIVYPDSKRCCCF
TKSYYRYVKGTGSLLATIQPNIKGKESSLKKQGLRYFTPREVANLHSFPDDFQFPEAISLRQCYALLGNSLSVAVVAPLLRYLFSQQS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25480 AtDNMT2, DNMT2 DNA METHYLTRANSFERASE 2, DNA m... Potri.006G250800
[exp]
0 1
AT1G74240 Mitochondrial substrate carrie... Potri.012G066000
[exp]
1.41 0.8517
AT5G63950 CHR24 chromatin remodeling 24 (.1) Potri.007G102800
[exp]
6.32 0.7289 CHR932
AT2G28450 C3HZnF zinc finger (CCCH-type) family... Potri.009G013000
[exp]
7.87 0.7543
AT1G17690 NOF1 nucleolar factor 1, unknown pr... Potri.003G010000
[exp]
8.30 0.7507
AT2G05120 Nucleoporin, Nup133/Nup155-lik... Potri.002G221300
[exp]
16.61 0.7249
AT2G36010 E2F_DP ATE2FA, E2F3 E2F transcription factor 3 (.1... Potri.006G205100
[exp]
19.79 0.6788 Pt-E2F3.1,E2Fa_1
AT5G25080 Sas10/Utp3/C1D family (.1) Potri.018G018100
[exp]
20.34 0.6631
AT1G48920 ATNUC-L1, PARL1 PARALLEL 1, nucleolin like 1 (... Potri.005G093100
[exp]
21.81 0.7244
AT1G63470 AT-hook AT hook motif DNA-binding fami... Potri.001G104900
[exp]
21.90 0.7166
AT5G23690 Polynucleotide adenylyltransfe... Potri.015G104300
[exp]
24.24 0.6962

Potri.006G250800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.