Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32420 284 / 3e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) AT3G63400 215 / 3e-62 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) AT3G56070 176 / 8e-51 ROC2 rotamase cyclophilin 2 (.1.2) AT2G21130 174 / 3e-50 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT2G15790 177 / 5e-49 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) AT4G38740 171 / 5e-49 ROC1 rotamase CYP 1 (.1) AT4G34870 168 / 4e-48 ATCYP1, ROC5 ARABIDOPSIS THALIANA CYCLOPHILIN 1, rotamase cyclophilin 5 (.1) AT2G16600 167 / 9e-48 ROC3 rotamase CYP 3 (.1.2) AT2G29960 166 / 4e-47 CYP19-4, ATCYP5, CYP5 CYCLOPHILIN 19-4, ARABIDOPSIS THALIANA CYCLOPHILIN 5, cyclophilin 5 (.1.2) AT3G55920 167 / 5e-47 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030300 [exp] 367 / 2e-114 AT4G32420 284 / 3e-83 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Potri.002G047200 [exp] 225 / 3e-63 AT3G63400 229 / 1e-66 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.005G215800 [exp] 218 / 2e-60 AT3G63400 252 / 2e-77 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Potri.004G144300 [exp] 186 / 4e-52 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.007G040100 [exp] 184 / 2e-51 AT2G15790 551 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.019G014396 [exp] 176 / 8e-51 AT3G56070 277 / 1e-96 rotamase cyclophilin 2 (.1.2) Potri.009G130100 [exp] 175 / 1e-50 AT2G21130 279 / 1e-97 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.009G106200 [exp] 181 / 2e-50 AT2G15790 561 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Potri.005G135500 [exp] 181 / 3e-50 AT2G15790 553 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013111 [exp] 296 / 6e-88 AT3G63400 288 / 5e-85 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10008079 [exp] 281 / 7e-82 AT4G32420 263 / 2e-75 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3.4) Lus10024831 [exp] 222 / 5e-62 AT3G63400 308 / 8e-99 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10018746 [exp] 219 / 5e-61 AT3G63400 306 / 4e-98 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1.2.3) Lus10022012 [exp] 176 / 6e-51 AT3G56070 295 / 1e-103 rotamase cyclophilin 2 (.1.2) Lus10042553 [exp] 176 / 1e-50 AT3G56070 297 / 1e-104 rotamase cyclophilin 2 (.1.2) Lus10012059 [exp] 181 / 2e-50 AT2G15790 596 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10020992 [exp] 181 / 3e-50 AT2G15790 598 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10027924 [exp] 178 / 1e-49 AT2G15790 534 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1) Lus10007579 [exp] 171 / 4e-49 AT2G16600 311 / 2e-110 rotamase CYP 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [poplar] [flax] Cyclophil-like PF00160 [poplar] [flax] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Potri.006G250900.3 pacid=42767237 polypeptide=Potri.006G250900.3.p locus=Potri.006G250900 ID=Potri.006G250900.3.v4.1 annot-version=v4.1 ATGGAGAAGAAGATGGCGAAGAAGAACCCGTTGGTTTTTATGGACGTGTGTATTGATGGCGATCCTAAGGAGAGAATGGTTTTTGAGCTTTTCTTGGATA TTGCTCCCAAGACTGTAGAAAATTTCCGTGCTCTGTGTACAGGGGAAAAAGGAATTGGTCCTAAATCTCAAAGACCATTGCACTACAAGGGATCCTTTTT CCATCGCATCATTAAAGGTTCCATGGCTCAGGGTGGTGATATTTTGAAACGAGATGGGACCTTTGGGGAGAGCATATATGGGGGCAAGTTTCCAGACGAG TCTCCAAAGCTAAAACATGATGAACCGGGTCTTCTGTCCATGTCAATTGCCGATCGTGATGCTTTAGGCTCTCAATTTATTATTACCTTCAGGGCAAATC ATCATCTTGACAGGAAGTATGTAGCCTTTGGGAAGCTTGTGCAAGGAGATAAAGTACTGAAGAATATTGAAGATGTGGGTGATGAAGAAGGGAGACCCAC TGTAACAGTGAAAATAATCAACTGTGGTGAATTTATAGAGGACAAAAAGAAAGTAAATAAACTGAAAGTGGAAAAGCACAAGAAATCTTCTAGAGACAGA AAGAGGAGGAGGAGAAACTACCTGTCCGACTCGGAGAGTTCATCTGATTCTGATATGGAATCAACGGAATCTGATAGTGATTCTGACTCCCTTTTGTCCT CATCATCTGACATTAGTTCTTCAAGTGAAGATAGGCGCAAGAAGAGAAAGAGAACTTCTAAACGAGACAAACATAGACGTGGAAAAAAACGAGACAAGAG ACGTGAAAAGAGGCGAAAGAGACGTGACAAGCGATCCAAACGTAGAACAAGAAGATCATCAGATAGTCTCACAGATGGTGAGAGTGAGAGTGAAACCAGC TCTGATGACGATGCTCTTAATGCTCAAGCAAAAGAGAGGAAGTGTAGAGACCCTTCTCAGAAAACTGCTGAGGGTCAGTCTCCTGTGGTTTTGGAGGAAG AAGTTGCCTCCCTTCCTTGTAAAAAGAGGGAGGAACCTGATATACTTGAAAAGGAAGATGGTGAATTCCCCAAGGAAAATGGATCTCGACGAAGTAATGG CATGGGGGCAGATGCTAAATCCTATGGAAGCGAAGATAGAGAACCCGATATCAGAGATGATCACCCAGTAAAATCCAGGAGCCAGAGCAGGAGCCAAAGC ATGAGTCCCAAGAGGACCACGAGTAAGAGTATGAGTATTAGTCCCAGGAGGAGCCTGAGCAAGAGCCCAGATGTTAGTCCAAAGAGAAGCGTAAGCAGGA GTCGCAGTGCTAGTAGAAGCCATCCTCGTGTCTCACAGAGGAGTATCAGCAGGAGTCCTGTTAGAAGTGGCAGCAGCCAGAGCCCAGCTAGAAGTTTCAG CAGAAGTCCTGTGAGGACCAAGAAGGCTAGAAGCATAAGCACGAGCCCGGTGAGATCTCGGTCTCCAAGAAGTTTTAGCAGGAGCCCTGTGAGAGCACTT CCTCGAAGAAGCCAAAGCAGGAGCCCAGTGAGATCTCTGTCTCGATCATTGAAGAAGTCAATTAGCAGAAGTCCTTTAAGAGATTCTAGGAGGAGCATAA GCAGAAGCCTGGTTCGATCTTCCCGGAGAAGCATTAGCAGAAGCCCAGTTAGATCTCGGAGAAGCATAAGCAGAAGCCCGGTTCGATCTTCCAGGAGGAG CGTCAGTAGAAGCCCGGTTCGATCTTCCAGGAGGAGCGTCAGCAGAAGCCCGGTTAGATCTTCCAGGAGAAGCGTCAGCAGAAGCCCGGTTAGATCTTCT CGGAGAAGCATTAGTAGAAGCTCTGGTAGGGCTCCTTCAAGGAGAAGTGTTAGCAGGAGTCCAATTAGGGCACCAAGCAGGAATAATCGTCGCAGCTACT CAAGGAGCCCTAGCACACGTAGGGCAAGGTTTCCTGATCGAAGAAGTTTGTCAAGAAGTGTTTCCCCGGATGGGTCTCCCAAGCGCATCAGGAGGGGAAG AGGTTTCAGTCAACGATATGCTTATGCTCGGAGATACAGAACTCCCTCTCCAAAGCGTTCTCCTGTGAGATCCTTCCGTTATAGCGGGCGTGATAGATAT TCCAGTTACCGAAGGTATTCTCCTAGGCGTTTTAGAAGTCCACCAAGAGGAAGAACTCCACCAAGCAGATATAGAGGGAGGAGAAGCCGTACACGAAGCC CATCTGTATCACGCAGCCCTCGTTATCGTAATCGTCATTATAGCCGCAGTGGCAGCCCTGTTCGCAGTCGTTCCCCAGTTGATGTGTCCAAGTCTCGTCT GTCTCCACGAGTTGCAAGGCAGAGGTCGCCGTCTAGCAGCCGGAGTCCATCAAAATCACGATCTTCATTGGATTCCCAGTCGCCAAAGCGACTCAGCAAA GACAGATCAAGGTCATCATCAAGGAGTCCCGGTGGGAAGAAGGGTCTGGTGTCGTATGATGATGGTTCTCCCGACTCTAGTCAAAGGTGA
AA sequence Show only first row Show all	>Potri.006G250900.3 pacid=42767237 polypeptide=Potri.006G250900.3.p locus=Potri.006G250900 ID=Potri.006G250900.3.v4.1 annot-version=v4.1 MEKKMAKKNPLVFMDVCIDGDPKERMVFELFLDIAPKTVENFRALCTGEKGIGPKSQRPLHYKGSFFHRIIKGSMAQGGDILKRDGTFGESIYGGKFPDE SPKLKHDEPGLLSMSIADRDALGSQFIITFRANHHLDRKYVAFGKLVQGDKVLKNIEDVGDEEGRPTVTVKIINCGEFIEDKKKVNKLKVEKHKKSSRDR KRRRRNYLSDSESSSDSDMESTESDSDSDSLLSSSSDISSSSEDRRKKRKRTSKRDKHRRGKKRDKRREKRRKRRDKRSKRRTRRSSDSLTDGESESETS SDDDALNAQAKERKCRDPSQKTAEGQSPVVLEEEVASLPCKKREEPDILEKEDGEFPKENGSRRSNGMGADAKSYGSEDREPDIRDDHPVKSRSQSRSQS MSPKRTTSKSMSISPRRSLSKSPDVSPKRSVSRSRSASRSHPRVSQRSISRSPVRSGSSQSPARSFSRSPVRTKKARSISTSPVRSRSPRSFSRSPVRAL PRRSQSRSPVRSLSRSLKKSISRSPLRDSRRSISRSLVRSSRRSISRSPVRSRRSISRSPVRSSRRSVSRSPVRSSRRSVSRSPVRSSRRSVSRSPVRSS RRSISRSSGRAPSRRSVSRSPIRAPSRNNRRSYSRSPSTRRARFPDRRSLSRSVSPDGSPKRIRRGRGFSQRYAYARRYRTPSPKRSPVRSFRYSGRDRY SSYRRYSPRRFRSPPRGRTPPSRYRGRRSRTRSPSVSRSPRYRNRHYSRSGSPVRSRSPVDVSKSRLSPRVARQRSPSSSRSPSKSRSSLDSQSPKRLSK DRSRSSSRSPGGKKGLVSYDDGSPDSSQR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32420			Cyclophilin-like peptidyl-prol...		Potri.006G250900 [exp]	0	1
AT2G38770		EMB2765	EMBRYO DEFECTIVE 2765, P-loop ...		Potri.003G201200 [exp]	2.64	0.9266
AT2G16880			Pentatricopeptide repeat (PPR)...		Potri.008G044000 [exp]	2.82	0.9242
AT3G22430			unknown protein		Potri.008G152900 [exp]	3.00	0.9205
AT3G20440		EMB2729, BE1	EMBRYO DEFECTIVE 2729, BRANCHI...		Potri.001G359200 [exp]	4.47	0.9203
AT4G03030			Galactose oxidase/kelch repeat...		Potri.005G221300 [exp]	5.47	0.9049
AT2G30120			unknown protein		Potri.001G281400 [exp]	6.70	0.8947
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.005G125300 [exp]	6.92	0.8918
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.019G041900 [exp]	11.22	0.8773
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.005G006400 [exp]	12.00	0.9026
AT1G74900		OTP43	organelle transcript processin...		Potri.015G070200 [exp]	12.04	0.8688

Compare expression of checked genes

Potri.006G250900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.