Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23030 58 / 3e-09 PUB11 ARM repeat superfamily protein (.1) AT5G67340 57 / 1e-08 ARM repeat superfamily protein (.1) AT1G67530 47 / 1e-05 ARM repeat superfamily protein (.1.2) AT3G01400 42 / 0.0004 ARM repeat superfamily protein (.1) AT5G62560 41 / 0.0009 PUB41 RING/U-box superfamily protein with ARM repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G037700 [exp] 62 / 2e-10 AT3G54790 707 / 0.0 ARM repeat superfamily protein (.1.2) Potri.005G225400 [exp] 62 / 2e-10 AT3G54790 736 / 0.0 ARM repeat superfamily protein (.1.2) Potri.012G076400 [exp] 54 / 7e-08 AT5G65200 469 / 2e-160 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.015G071200 [exp] 52 / 2e-07 AT5G65200 536 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 38, plant U-box 38 (.1) Potri.006G015100 [exp] 49 / 2e-06 AT4G16490 509 / 1e-178 ARM repeat superfamily protein (.1) Potri.016G010800 [exp] 48 / 4e-06 AT4G16490 521 / 0.0 ARM repeat superfamily protein (.1) Potri.017G073400 [exp] 43 / 0.0002 AT5G40140 328 / 9e-108 RING/U-box superfamily protein with ARM repeat domain (.1) Potri.002G118800 [exp] 41 / 0.0006 AT3G01400 521 / 0.0 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014221 [exp] 236 / 8e-77 AT2G28830 75 / 4e-15 PLANT U-BOX 12 (.1) Lus10024899 [exp] 67 / 7e-12 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 65 / 2e-11 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10034113 [exp] 53 / 2e-07 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10043471 [exp] 52 / 2e-07 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10030628 [exp] 47 / 1e-05 AT1G60190 553 / 0.0 plant U-box 19, ARM repeat superfamily protein (.1) Lus10030862 [exp] 46 / 4e-05 AT1G60190 522 / 1e-177 plant U-box 19, ARM repeat superfamily protein (.1) Lus10022691 [exp] 44 / 9e-05 AT3G52570 224 / 5e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10022690 [exp] 0 / 1 AT2G28830 52 / 6e-08 PLANT U-BOX 12 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G251000.2 pacid=42767610 polypeptide=Potri.006G251000.2.p locus=Potri.006G251000 ID=Potri.006G251000.2.v4.1 annot-version=v4.1 ATGTCAGCAACCAGGCTGCGTGAAACCATTACTGAATGCCTTGCTGATGTTCAGTCAGACTCCGTTGATGCTCAGCGGAAAGCTCTGCAAACCCTAGCTG CCCTTACCAAGGTCAGTCCCCAGAACAGGAGCTTGCTTGCACAAACAGACGGTGTCGTATCTACCCTTCTTACCCTGACCAAAATCTCCTCCTCTATCAT CAGAATCCTTGCGTTATCCATTCTTTTCAACCTCTCCCTGAACCCTGATCTAAAGTGGAATCTTGCAGATATGGAAACCATTCATCATCTCAATTCAATA ATTCTCTCAGCAAGTTCCCCTGAAATCAACCGGTTAGTTTGCTCTTTGATTTGCAGCTTAGCGATGCTAGACAAAAACAAGGCCAAGTTTGGGGTGGCAG GTACTGTCCAGGTGCTGGTTGGTGCTATTTCAGGACCTCGTTGTCCTGCCTCTCACCATCTCCTTAGTTCCTTGGCTGAGCTTGTGCAGTTTCATGGGAA TTGTACAGTGGCTGTCCGTTCAGGAGCAGTCCAAGTGCTCATTGGAGTAGTGGAGAGCACAGATGGCGAGGATTTGGCTGGGACTTCTCTTGCTGTTCTA GGTCACCTAGCTCGGTTCAATGAAGGATTGAATGCCTTAATAAGAACTGACCAGATCGTGAGTTCTATGTTAAATGTTCTAAGAGGGAGGTGCATGCTGA GCAAGGAAGGCGCAGCGGAGATTCTTCTTCGGCTTTTCGACGAAAGTGAAGGTTGCGTTAGAGATGCTTTCAGGCTGCCAGAGTTCTCGTCTGTCCTGGC TGATATTTCAGTGAGAGGATCATCAAAGGCACGCGAGAAGGCAAATCAGCTACTGAAGAAGATGGTGGATGCTAACCTTGATCCTTACACTGATGGGAAT TCCCTGTTTCTCCCATGGTATCAATGA
AA sequence Show only first row Show all	>Potri.006G251000.2 pacid=42767610 polypeptide=Potri.006G251000.2.p locus=Potri.006G251000 ID=Potri.006G251000.2.v4.1 annot-version=v4.1 MSATRLRETITECLADVQSDSVDAQRKALQTLAALTKVSPQNRSLLAQTDGVVSTLLTLTKISSSIIRILALSILFNLSLNPDLKWNLADMETIHHLNSI ILSASSPEINRLVCSLICSLAMLDKNKAKFGVAGTVQVLVGAISGPRCPASHHLLSSLAELVQFHGNCTVAVRSGAVQVLIGVVESTDGEDLAGTSLAVL GHLARFNEGLNALIRTDQIVSSMLNVLRGRCMLSKEGAAEILLRLFDESEGCVRDAFRLPEFSSVLADISVRGSSKAREKANQLLKKMVDANLDPYTDGN SLFLPWYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G23140			RING/U-box superfamily protein...		Potri.006G251000 [exp]	0	1
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.002G262500 [exp]	2.44	0.8465
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.010G240600 [exp]	3.00	0.8474	Pt-GER2.19
					Potri.019G017302 [exp]	6.32	0.8320
AT4G08250	GRAS		GRAS family transcription fact...		Potri.009G075500 [exp]	10.24	0.7274
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	14.00	0.7010
					Potri.006G021800 [exp]	14.69	0.7989
					Potri.012G096050 [exp]	15.90	0.7209
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137800 [exp]	16.49	0.7438
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.004G132500 [exp]	18.02	0.8315	LCOSC2.4
AT3G04200			RmlC-like cupins superfamily p...		Potri.010G240500 [exp]	23.74	0.8375

Compare expression of checked genes

Potri.006G251000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.