Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 370 / 6e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 355 / 5e-125 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 351 / 7e-123 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 159 / 3e-48 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 124 / 1e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 117 / 5e-32 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G47786 115 / 7e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G52460 109 / 6e-29 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 84 / 2e-20 alpha/beta-Hydrolases superfamily protein (.1) AT1G52440 82 / 7e-19 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030200 [exp] 472 / 4e-171 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 401 / 5e-143 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 390 / 2e-138 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G070700 [exp] 375 / 5e-133 AT5G20060 398 / 8e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.011G023000 [exp] 82 / 3e-18 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.004G001701 [exp] 40 / 0.0008 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008078 [exp] 416 / 5e-149 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10019438 [exp] 363 / 3e-128 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 364 / 1e-127 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 314 / 2e-108 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 305 / 6e-105 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10002034 [exp] 215 / 2e-68 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.006G251100.1 pacid=42770065 polypeptide=Potri.006G251100.1.p locus=Potri.006G251100 ID=Potri.006G251100.1.v4.1 annot-version=v4.1 ATGAGCTACAATACCTCCGCTGCAGGATCTGGCAGTAGGAATACTACAAGAACATTTGAGTTTGGAAGGACCCATGTGGTGAGGCCTAAAGGAAAGCACC AGGCCACTATAGTTTGGCTGCATGGCCTTGGTGATAAGGGCTCAAGCTGGTCCCAGCTCTTGGAAACCCTTCCCCTTCCAAATATTAAATGGATATGCCC AACTGCTCCAACCAGGCCAGTAGCAATATTTGGTGGATTTCCATGCACTGCTTGGTCTGATGTTGGGGATATTTCGGAAGATGCCCCTGATGATTTGGAG GGGCTAGATGCTTCAGCAGCGCATGTTGCAAATCTTTTATCGACCGAGCCTGCTGATATCAAACTTGGTGTAGGTGGCTTCAGTATGGGAGCTGCAACCG CCCTCTACTCTGCCACATGCCACATTTTTGGGCAATATGGGAATGGAAACCTGTACCCAGTCAACTTAAGTGCAATTGTTGGTCTAAGTGGCTGGCTTCC ATGTTCAAGGACCTTGAGGAACCGGATGGAAAGATCAGATGAAGCTGCAAGACGTGCAGCATCCTTGCCCATCTTGCTCTGCCATGGCTCAGGTGATGAT GTGGTTGCACATAAACATGGAGAGAAATCAGCACAAGCATTAAGTTCAGCTGGATTCCGTAATCTTACATTTAGAAGCTATAATGGGCTTGGCCATTACA CAATCCCTGAAGAGATGGATGAAGTTTGTAATTGGCTAACCACGAGGATAGGTCTCGAAGGGCCACGGTCTTAA
AA sequence Show only first row Show all	>Potri.006G251100.1 pacid=42770065 polypeptide=Potri.006G251100.1.p locus=Potri.006G251100 ID=Potri.006G251100.1.v4.1 annot-version=v4.1 MSYNTSAAGSGSRNTTRTFEFGRTHVVRPKGKHQATIVWLHGLGDKGSSWSQLLETLPLPNIKWICPTAPTRPVAIFGGFPCTAWSDVGDISEDAPDDLE GLDASAAHVANLLSTEPADIKLGVGGFSMGAATALYSATCHIFGQYGNGNLYPVNLSAIVGLSGWLPCSRTLRNRMERSDEAARRAASLPILLCHGSGDD VVAHKHGEKSAQALSSAGFRNLTFRSYNGLGHYTIPEEMDEVCNWLTTRIGLEGPRS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.006G251100 [exp]	0	1
AT4G22840			Sodium Bile acid symporter fam...		Potri.003G117300 [exp]	7.21	0.8771
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	7.81	0.8837
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.002G071900 [exp]	24.00	0.8681
AT1G75840		ATROP4, ATGP3, ...	RHO-LIKE GTP BINDING PROTEIN 4...		Potri.019G092300 [exp]	27.87	0.8517
AT5G13260			unknown protein		Potri.003G164100 [exp]	30.74	0.8589
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	33.70	0.8665	Pt-SSH1.2
AT4G30993			Calcineurin-like metallo-phosp...		Potri.006G187500 [exp]	34.14	0.8328
AT5G15900		TBL19	TRICHOME BIREFRINGENCE-LIKE 19...		Potri.017G110200 [exp]	37.70	0.8474
AT1G04910			O-fucosyltransferase family pr...		Potri.001G316800 [exp]	38.47	0.8511
AT4G25680			PPPDE putative thiol peptidase...		Potri.004G079800 [exp]	42.07	0.8290

Compare expression of checked genes

Potri.006G251100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.