Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CPP1.22
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22780 188 / 6e-50 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G14770 161 / 4e-41 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22760 157 / 4e-40 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 135 / 7e-33 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT4G29000 100 / 1e-21 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT5G25790 97 / 7e-21 CPP Tesmin/TSO1-like CXC domain-containing protein (.1) AT2G20110 93 / 2e-19 CPP Tesmin/TSO1-like CXC domain-containing protein (.1.2) AT3G16160 79 / 4e-15 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030000 [exp] 1056 / 0 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 173 / 1e-44 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.008G156100 [exp] 163 / 2e-41 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.005G051100 [exp] 151 / 2e-37 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.001G173600 [exp] 150 / 2e-37 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.018G039300 [exp] 96 / 3e-20 AT2G20110 269 / 2e-81 Tesmin/TSO1-like CXC domain-containing protein (.1.2) Potri.018G083000 [exp] 92 / 2e-19 AT4G29000 410 / 9e-139 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.006G160400 [exp] 92 / 4e-19 AT4G29000 518 / 2e-178 Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G184800 [exp] 91 / 1e-18 AT2G20110 286 / 3e-90 Tesmin/TSO1-like CXC domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002033 [exp] 522 / 5e-172 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 494 / 2e-161 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10006604 [exp] 136 / 9e-33 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 135 / 3e-32 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011693 [exp] 100 / 3e-21 AT4G29000 330 / 3e-105 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10043225 [exp] 99 / 4e-21 AT4G29000 520 / 2e-179 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10009494 [exp] 96 / 3e-20 AT4G29000 335 / 2e-106 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10023656 [exp] 94 / 2e-19 AT4G29000 491 / 2e-168 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10011103 [exp] 82 / 8e-16 AT4G29000 463 / 8e-157 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10020590 [exp] 54 / 7e-08 AT4G14770 102 / 3e-25 TESMIN/TSO1-like CXC 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03638 [poplar] [flax] TCR Tesmin/TSO1-like CXC domain, cysteine-rich domain
Representative CDS sequence Show only first row Show all	>Potri.006G251200.3 pacid=42768425 polypeptide=Potri.006G251200.3.p locus=Potri.006G251200 ID=Potri.006G251200.3.v4.1 annot-version=v4.1 ATGGATTCTCCTAAAACCACCACCACCACCACCACCACCACAACAACCACCATTTCCGCCACTGCCACCACCGTTAGTTTATCAGATTCTCCCCCAGTTC AAGAATCCCCATTTTCTAATTACATAAGCAATCTATCGCCTATTAAGCCTGTCAACACTGCACATGTAGCACATGGACTCCTAGGAATCAATTCCCCTCC ACTTGTCTTCAAGTCACCACATACAGCATCAGACCGTCAAATAAATCTCTTGCGAAGGTTTCAATATCCTCAGATATCTGGGGCAGAAACATCTAAGATT GACGATGGAAGCAAGAAATCTATTGATGGTCCGGAGGATATGGGGAAATCGAGCATCTGTTTGACTAGCAATCTGATTGTTGACTCCCAAACAAGCGACA ATGTCAATAACTCTGAACAAGACCAACCTGGCAGCTCCTCAGGCTGTGTTGATGAGTACTTATCTGATCCTGTGGATGCAGATTGTGCAGACTCTGTTAA TTTGGTAAACCCAAACGTGAAAAAATCTGATGATGCACTTCAGTCATCAGAAAGTAATTTAACCAACTTGAAAATAGTAGAATCTGATGACATAAATGAT AAGGGGACGAAAGGGGAGGTGTCTCAGGCCAGGCCTGAGCAAGATGGAGAGGATCCTAAGGAGCAGCCAACATCTGAAAATAAGATGGAAAAGATTAAAG AGGAGGGAAGCCTTGCCAAACAACCATCTCATGTTTGCCCAAATTTTGGGTCTGACTTGCTTGTAGACCATGCTTCTAGGCAACAATGCTACACTTCAGG GGCTCAGGTTGCTCATCCACATGAACCTATTCAACTCATAACATATAATGGTTCAGAGGTCAGTCAGCTCCAACGTGGCATGAGTAGACGCTGCCTTCAG TTTGAACAAGCTCAACAGGAAACTACAAAGGATGGTACCTATTCTCCAAATCCAGCAATCAATTTATTTGGTTCAATATCACCTGCTTCCAGTACAGAAT TGGAGATTTTGGATTCATCTCAGGTGGAGCTAACTATCTCTTCCCACAAGGAGCAAACTATGAGTGCTATGTTTTCCGCTAATATAAGTGGAAAGTGTCC CGTAGCTGTTTCCAAGCCTTCAGGTATTGGCTTGCATCTCAATAGCATTGTCAACACTTTGCCAATGGGAAGCGGTGCATCAGGACCTATCATGAGCCAC CATTTAGTGGAGAACAAAATTAGTTGCTCCAAACTATCAAATTTAGTTGAGAGAGTCTCATTAACTGCGGGAGATGGAGTGCTCCAAACTAAGGCTTCAC TTGCTACAAGCTCTACCACTTCTGAGTCTTTTCACAACATGGAATCTTTTAATAACTTGCAGCCACCAGAACATCAGGTAACTCCACACAATAAGAGGAG ATTTAGTTCAGAGCACGCTGGCAATTTTGAGGACTTCAGCCCATCAAGCCCCAAGAAGAAAAGGAAGAAAGCATCAAGCACTGATGGTGATGGTTGCAAA CGTTGCAACTGTAGGAAGACTAAATGTTTGAAACTATACTGTGATTGTTTTGCAGCCGGAATCTACTGTGCTGCAATTTGTGCTTGCCAGGGGTGCTTTA ACAGGCCTGAATATGAAGATACTGTTCTTGAAACACGACAACAAATTGAATCACGTAATCCACTTGCTTTCGCTCCAAAGATTGTACAGCATGTGACTGA GTTTCAAGCAATCGATGTGGAAGATGTAGACCTGTTTACACCGTACTCAGGGAGGCATAAGACAGGATGCAATTGCAAAAGGTCAATGTGTGTGAAAAAG TATTGTGAATGCTATCAGGCTAATGTCGGATGCTCCAATGCTTGTCGATGTGAAGGGTGCAGAAATATCCACGGTAGGAAAGAAGAATATGCCATGACTC AAGAAATAGTAAGCAACAGAGCTAATGAAGAAAGTTTAGAAGGCATGGCTGATGAGAAATTGGAAATGGTTGCAAACAATAAATTTTTACATACTGAGCT ATACGATCTGCGCAGCCTCACACCACCAACACCATCATTTGAGTACTTAAGCCATGAAAAGGATGCACCAAAATCCCGACTCCTTCCTGGTAGGTATGTC TTATCGTCTGAGTCTGATTTTTCTATGCTGCCATCTTATGCAAAATCCGTAAGTTCTCCAAGCAATTCACAAGGCAACGACATGCTTCCAAAAACAAGTA TAACCCTCGACATAGTTTCCCACGGCCAGGAACTAGATTATAACATTACTGAAATAACGGGCCAATTCTCACCACAATTTGATGAACTTGCCGATTTCTC TGATCATACTCCACTGCCAAATCCGTCCTCAATCATGATGGCTTCTTCGGCTTCGTCTAAAACACAGGACAAGGCAAATGTTTCACAACCTCGGGTGTAT CCTGGAAGTGCTCGTCTCTCATCTGGCAGTTCTCTTCATTGGTACAGTTCACCAATTACCCCAATGACTCGGTTAGGTGAGACAAAAAATCAAGCACAGG ACTCTGATTGTGGGCTTTATGACATTCTGGAAGATGACACACCCGAAATATTAAAGGATTCTTCTGCCCCTATCACATCTGTTAAAGCAAGCTCTCCTAA TAAAAAGCGAGTTTCTCCGCCTCACAGTCACATTCGAGAGTTTCAATCGAGCTCTTCAGCAGGCTTGAAAAGTGGGCGCGGGCGCAAGTTCATTTTGAAA TCTGTGCCTTCTTTCCCGCCCCTCACTCCTTGTCTCGATTCCAAAGATTGCACCCAACAGAAATACTAG
AA sequence Show only first row Show all	>Potri.006G251200.3 pacid=42768425 polypeptide=Potri.006G251200.3.p locus=Potri.006G251200 ID=Potri.006G251200.3.v4.1 annot-version=v4.1 MDSPKTTTTTTTTTTTTISATATTVSLSDSPPVQESPFSNYISNLSPIKPVNTAHVAHGLLGINSPPLVFKSPHTASDRQINLLRRFQYPQISGAETSKI DDGSKKSIDGPEDMGKSSICLTSNLIVDSQTSDNVNNSEQDQPGSSSGCVDEYLSDPVDADCADSVNLVNPNVKKSDDALQSSESNLTNLKIVESDDIND KGTKGEVSQARPEQDGEDPKEQPTSENKMEKIKEEGSLAKQPSHVCPNFGSDLLVDHASRQQCYTSGAQVAHPHEPIQLITYNGSEVSQLQRGMSRRCLQ FEQAQQETTKDGTYSPNPAINLFGSISPASSTELEILDSSQVELTISSHKEQTMSAMFSANISGKCPVAVSKPSGIGLHLNSIVNTLPMGSGASGPIMSH HLVENKISCSKLSNLVERVSLTAGDGVLQTKASLATSSTTSESFHNMESFNNLQPPEHQVTPHNKRRFSSEHAGNFEDFSPSSPKKKRKKASSTDGDGCK RCNCRKTKCLKLYCDCFAAGIYCAAICACQGCFNRPEYEDTVLETRQQIESRNPLAFAPKIVQHVTEFQAIDVEDVDLFTPYSGRHKTGCNCKRSMCVKK YCECYQANVGCSNACRCEGCRNIHGRKEEYAMTQEIVSNRANEESLEGMADEKLEMVANNKFLHTELYDLRSLTPPTPSFEYLSHEKDAPKSRLLPGRYV LSSESDFSMLPSYAKSVSSPSNSQGNDMLPKTSITLDIVSHGQELDYNITEITGQFSPQFDELADFSDHTPLPNPSSIMMASSASSKTQDKANVSQPRVY PGSARLSSGSSLHWYSSPITPMTRLGETKNQAQDSDCGLYDILEDDTPEILKDSSAPITSVKASSPNKKRVSPPHSHIREFQSSSSAGLKSGRGRKFILK SVPSFPPLTPCLDSKDCTQQKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	0	1	Pt-CPP1.22
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	2.00	0.9338
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	3.00	0.9264	CPE902,Pt-SMC2.2
AT3G57060			binding (.1.2)		Potri.006G041500 [exp]	3.46	0.9340
AT4G13690			unknown protein		Potri.003G177900 [exp]	4.69	0.9117
AT1G03780		AtTPX2, TPX2	targeting protein for XKLP2 (....		Potri.007G138600 [exp]	5.00	0.9200
AT2G38720		MAP65-5	microtubule-associated protein...		Potri.003G192400 [exp]	6.48	0.8928
AT1G44110		CYCA1;1	Cyclin A1;1 (.1)		Potri.005G181400 [exp]	7.48	0.9203
AT2G47920			Kinase interacting (KIP1-like)...		Potri.014G135000 [exp]	9.21	0.8382
AT3G42660			transducin family protein / WD...		Potri.012G065200 [exp]	9.38	0.9192
AT5G44635		MCM6	MINICHROMOSOME MAINTENANCE 6, ...		Potri.001G074000 [exp]	10.39	0.9193

Compare expression of checked genes

Potri.006G251200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.