Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11280 314 / 5e-110 unknown protein AT1G80200 119 / 3e-33 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G061800 [exp] 207 / 4e-64 AT1G15410 387 / 4e-132 aspartate-glutamate racemase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002030 [exp] 333 / 3e-117 AT5G11280 323 / 2e-113 unknown protein Lus10002898 [exp] 291 / 2e-101 AT5G11280 281 / 1e-97 unknown protein Lus10036085 [exp] 178 / 3e-52 AT1G80190 253 / 1e-80 partner of SLD five 1 (.1) Lus10026797 [exp] 127 / 7e-36 AT5G11280 121 / 1e-33 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.006G251600.1 pacid=42768564 polypeptide=Potri.006G251600.1.p locus=Potri.006G251600 ID=Potri.006G251600.1.v4.1 annot-version=v4.1 ATGGCAACATCAACTGCAGCGGCAGCAGGAACATCAACAGCAACAACAAGGAGGAGGAGTTGGGTAAGCAATCTAACATCATACGCAGCTCGCATCTATT TCTTCATCATCTTTCTCCAGGTCCCCCTTTTCAGGATACCATGTAGATCAGGCATGTGCTCAACGCCAATCCATGTGACATCCTCCCAGTTGATTGCTAG TGAGATCTTTCCTGTTCCTGTAGTGAAAGCTCTTCTCTACCCTGGAGCCGTTGTGAATGGTCTTGTAAGGAACATGACTGTTCCGAGCTGGGATAAGCTG TTGAATATCTATAACTTGACCAGTGCGAAGGAAGCACCTGCAGTAACTGATCTTCAGCGCTTAGAGGTTCTTGCTGGAAGCTACTTTTCTGTGGCTGGAG CTCTTGTTGGCATTCTAAAACCTGGGAGGATGAGCATGTTTGGAACACTTCTTATTATCTGGGGGCTTGTCAAGGAAGGGATCCTGGGAAAGCCAGCGAA TACAGATCCTGCTAAGGCTGTATATGTATACCCAACAATGTTGATTGCCCTGGTCTGTGCCTTCTCGGCTGTGAAGTATGATATGAAGAAGGTTGTGAGA AGTGCCCCGCCTCGGCCCATTGCAAAGCCTCTGCAGAGATCTTCAAAATCTAAGCTGAAATGA
AA sequence Show only first row Show all	>Potri.006G251600.1 pacid=42768564 polypeptide=Potri.006G251600.1.p locus=Potri.006G251600 ID=Potri.006G251600.1.v4.1 annot-version=v4.1 MATSTAAAAGTSTATTRRRSWVSNLTSYAARIYFFIIFLQVPLFRIPCRSGMCSTPIHVTSSQLIASEIFPVPVVKALLYPGAVVNGLVRNMTVPSWDKL LNIYNLTSAKEAPAVTDLQRLEVLAGSYFSVAGALVGILKPGRMSMFGTLLIIWGLVKEGILGKPANTDPAKAVYVYPTMLIALVCAFSAVKYDMKKVVR SAPPRPIAKPLQRSSKSKLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11280			unknown protein		Potri.006G251600 [exp]	0	1
AT2G43810			Small nuclear ribonucleoprotei...		Potri.008G078400 [exp]	1.00	0.8735
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G005000 [exp]	5.47	0.8296
AT5G25360			unknown protein		Potri.001G192700 [exp]	8.94	0.7783
AT3G05100			S-adenosyl-L-methionine-depend...		Potri.005G046300 [exp]	13.60	0.7793
AT3G18510			unknown protein		Potri.011G140300 [exp]	15.29	0.8096
AT1G01170			Protein of unknown function (D...		Potri.006G051900 [exp]	17.54	0.8129	ATOZI1.1
AT1G08750			Peptidase C13 family (.1.2.3)		Potri.019G014000 [exp]	17.74	0.7855
AT5G05370			Cytochrome b-c1 complex, subun...		Potri.019G132000 [exp]	28.49	0.8364
AT1G60970			SNARE-like superfamily protein...		Potri.001G352900 [exp]	34.48	0.7887
AT5G16060			Cytochrome c oxidase biogenesi...		Potri.017G113401 [exp]	36.76	0.7729

Compare expression of checked genes

Potri.006G251600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.