Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ASTRAY.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11260 143 / 8e-44 bZIP TED5, HY5 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) AT3G17609 72 / 3e-16 bZIP HYH HY5-homolog (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029500 [exp] 188 / 9e-62 AT5G11260 185 / 2e-60 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Potri.010G004200 [exp] 57 / 4e-10 AT3G17609 132 / 1e-39 HY5-homolog (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002900 [exp] 146 / 4e-45 AT5G11260 197 / 3e-65 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1) Lus10002028 [exp] 131 / 4e-39 AT5G11260 182 / 5e-59 REVERSAL OF THE DET PHENOTYPE 5, ELONGATED HYPOCOTYL 5, Basic-leucine zipper (bZIP) transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [poplar] [flax] bZIP PF00170 [poplar] [flax] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Potri.006G251800.2 pacid=42766924 polypeptide=Potri.006G251800.2.p locus=Potri.006G251800 ID=Potri.006G251800.2.v4.1 annot-version=v4.1 ATGCAAGAACAAGCAGCCAGTTCAATTCCTGCTTATTCTTTTCCGTCTAGCAGTGAGAGATCTTCAAGTTCTGCTCCTCAACTTGAAGTCAAAGAAGGTA TGGAGAGTGATGAGGAAATAAGAAGAGTGCCAGAGATGAGCGGTGAACCGGCCGGGACATCAGCCTCTGGCAGAGAGACCGGTTCAATTGCCGGTCCGGG CAGAGTGCAGCCTGCAGGAGAGGGACAAAGTCAGAGAAAGAGAGGAAGGAGTCCAGCTGACAAAGAAAACAAGAGGCTAAAGAGGTTGTTGAGGAATAGA GTATCAGCCCAGCAAGCAAGGGAGAGGAAGAAGGCTTACTTGACTGAGTTGGAAACACGAGTTAAAGACTTGGAAAAGAAGAATTCTGAGCTTGAAGAGA AGCTTTCTACCTTGCAGAATGAGAATCAAATGCTTAGACATATACTGAAGAACACAACAGCAAGCAGGAGAGGAGGCAGCAATAGTGCTAATGCAGATGG CTCTTCATGA
AA sequence Show only first row Show all	>Potri.006G251800.2 pacid=42766924 polypeptide=Potri.006G251800.2.p locus=Potri.006G251800 ID=Potri.006G251800.2.v4.1 annot-version=v4.1 MQEQAASSIPAYSFPSSSERSSSSAPQLEVKEGMESDEEIRRVPEMSGEPAGTSASGRETGSIAGPGRVQPAGEGQSQRKRGRSPADKENKRLKRLLRNR VSAQQARERKKAYLTELETRVKDLEKKNSELEEKLSTLQNENQMLRHILKNTTASRRGGSNSANADGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11260	bZIP	TED5, HY5	REVERSAL OF THE DET PHENOTYPE ...		Potri.006G251800 [exp]	0	1	Pt-ASTRAY.2
AT3G60300			RWD domain-containing protein ...		Potri.002G138000 [exp]	16.61	0.6377
AT3G52220			unknown protein		Potri.010G240300 [exp]	42.21	0.6385
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Potri.008G191600 [exp]	69.19	0.6144
AT1G17080			Ribosomal protein L18ae family...		Potri.001G380200 [exp]	95.49	0.6118
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	140.82	0.5906
AT5G49480		ACP1, ATCP1	Ca2+-binding protein 1, Ca2+-b...		Potri.010G146900 [exp]	144.04	0.5888	Pt-CP1.1
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Potri.008G165700 [exp]	178.40	0.5342

Compare expression of checked genes

Potri.006G251800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.