Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CESA4.4
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32410 1900 / 0 AtCESA1, RSW1, CESA1 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) AT2G25540 1760 / 0 CESA10 cellulose synthase 10 (.1) AT5G05170 1530 / 0 IXR1, CEV1, ATH-B, ATCESA3, CESA3 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) AT5G17420 1402 / 0 ATCESA7, MUR10, IRX3 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) AT5G09870 1396 / 0 CESA5 cellulose synthase 5 (.1) AT2G21770 1393 / 0 CESA09, CESA9 cellulose synthase A9 (.1) AT5G64740 1392 / 0 PRC1, IXR2, E112, CESA6 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) AT4G39350 1383 / 0 ATH-A, CESA2, ATCESA2 cellulose synthase A2 (.1) AT5G44030 1367 / 0 IRX5, NWS2, CESA4 IRREGULAR XYLEM 5, cellulose synthase A4 (.1) AT4G18780 1279 / 0 LEW2, IRX1, ATCESA8, CESA8 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G029400 [exp] 2120 / 0 AT4G32410 1898 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Potri.009G060800 [exp] 1554 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.001G266400 [exp] 1553 / 0 AT5G05170 1838 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.016G054900 [exp] 1511 / 0 AT5G05170 1754 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.006G052600 [exp] 1509 / 0 AT5G05170 1749 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Potri.013G019800 [exp] 1477 / 0 AT5G64740 1512 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.005G027600 [exp] 1472 / 0 AT5G64740 1506 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Potri.006G181900 [exp] 1439 / 0 AT5G17420 1730 / 0.0 MURUS 10, IRREGULAR XYLEM 3, CELLULOSE SYNTHASE CATALYTIC SUBUNIT 7, Cellulose synthase family protein (.1) Potri.002G066600 [exp] 1436 / 0 AT4G39350 1655 / 0.0 cellulose synthase A2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028597 [exp] 1975 / 0 AT4G32410 1922 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10018902 [exp] 1970 / 0 AT4G32410 1915 / 0.0 RADIALLY SWOLLEN 1, cellulose synthase 1 (.1) Lus10012198 [exp] 1508 / 0 AT5G05170 1774 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10007538 [exp] 1508 / 0 AT5G05170 1772 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10039607 [exp] 1506 / 0 AT5G05170 1820 / 0.0 ISOXABEN RESISTANT 1, CONSTITUTIVE EXPRESSION OF VSP 1, CELLULOSE SYNTHASE 3, Cellulose synthase family protein (.1) Lus10041063 [exp] 1389 / 0 AT5G64740 1868 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10002939 [exp] 1386 / 0 AT5G64740 1870 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10003526 [exp] 1384 / 0 AT5G64740 1863 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10006161 [exp] 1339 / 0 AT5G64740 1734 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10007296 [exp] 1256 / 0 AT4G18780 1671 / 0.0 LEAF WILTING 2, IRREGULAR XYLEM 1, CELLULOSE SYNTHASE 8, cellulose synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF13632 [poplar] [flax] Glyco_trans_2_3 Glycosyl transferase family group 2
Representative CDS sequence Show only first row Show all	>Potri.006G251900.3 pacid=42768634 polypeptide=Potri.006G251900.3.p locus=Potri.006G251900 ID=Potri.006G251900.3.v4.1 annot-version=v4.1 ATGGAAGCAAATGCGGGTATGGTCGCTGGGTCTTACAGGAGGAATGAATTGGTTCGGATTCGACATGATTCGGATAGTGCGCCCAAACCCCTCAAAAACT TGAATGGACAAACTTGCCAGATTTGTGGGGATAATGTTGGAGTTACAGAGAATGGCGACATCTTTGTTGCTTGCAATGAGTGTGCTTTCCCAGTTTGCCG TCCTTGTTATGAGTATGAGCGAAAAGATGGGACTCAGTCTTGCCCTCAGTGTAAGACTAGGTATCGAAGGCACAAAGGGAGTCCTCGAGTGGATGGAGAT GAGGATGAAGATGATGTTGATGATCTAGAGAATGAGTTCAATTATGCCCAAGGCATTGGCAAGGCAAGGCGTCAGTGGCAGGGTGAAGATATAGAACTTT CTTCATCCTCTAGACATGAATCTCAACCAATTCCCCTTCTCACGAATGGGCAGCCGGTTTCTGGTGAAATTCCCTGTGCTACACCCGACAATCAATCTGT AAGAACTACATCTGGTCCTTTGGGTCCTGCTGAAAGGAATGTTAATTCATCCCCTTATATTGATCCAAGGCAGCCAGTTCATGTTAGAATTGTGGATCCG TCAAAGGACTTGAATTCTTATGGCCTTGGCAATGTTGACTGGAAGGAGAGGGTTGAAGGTTGGAAGCTTAAACAGGACAAAAATATCATGCAGATGACCA ACAGATACCCTGAAGGAAAGGGGGACATAGAAGGCACTGGTTCGAATGGAGATGAACTTCAAATGGCTGATGATGCTCGACAACCTTTGAGCCGTGTGGT GCCCATTTCTTCATCTCACCTGACTCCTTATCGTGTTGTAATCATTCTGCGTCTTATTATTTTGGGATTCTTCTTACAATATCGTGTAACTCATCCTGTG AAAGATGCATATGGTTTGTGGTTGACATCTGTTATCTGTGAGATTTGGTTTGCCTTGTCATGGCTTCTGGATCAGTTTCCAAAATGGATGCCTATCAATC GCGAGACCTACCTCGACAGGCTAGCATTAAGATATGATCGTGATGGTGAACCATCACAGTTAGCTCCTATTGACATCTTTGTTAGTACAGTGGATCCCTT GAAAGAACCTCCTATTGTAACAGCAAACACTGTGTTGTCCATTCTTGCTGTTGATTACCCTGTCGACAAAGTATCATGCTATGTTTCAGATGATGGTTCA GCTATGTTGACATTTGAAGCCCTTTCTGAAACTGCGGAATTTGCAAGGAAGTGGGTGCCTTTCTGCAAGAAGCACAATATTGAGCCTAGGGCCCCGGAGT TTTATTTTGCCCAAAAGATTGATTATCTGAAGGACAAGATACAGCCTTCTTTTGTGAAAGAGCGCCGAGCAATGAAGAGAGAATATGAAGAATTCAAGGT GCGGATCAATGCTCTTGTTGCCAAAGCTCAGAAGATGCCAGAAGAAGGTTGGACAATGCAGGATGGAACTCCTTGGCCTGGAAATAATCCCAGGGATCAC CCAGGAATGATCCAGGTGTTCTTAGGTCACAGCGGGGGGCTCGATACAGATGGAAATGAGCTACCTCGTCTTGTATATGTTTCTCGTGAAAAGAGACCTG GATTCCAGCATCACAAGAAAGCCGGAGCAATGAATGCACTGATTCGAGTTTCAGCTGTACTGACCAATGGTGCCTATCTTCTGAACGTCGATTGTGATCA CTACTTCAATAACAGCAAAGCTCTTAAAGAAGCCATGTGTTTCATGATGGACCCTGCCTATGGAAAGAAGACATGCTATATACAGTTCCCACAACGTTTT GATGGCATTGACTTGCACGATCGATATGCCAATCGCAATATTGTTTTCTTTGATATCAACTTGAAGGGTCTGGACGGCATCCAGGGGCCTGTGTATGTTG GGACTGGTTGCTGTTTCAACCGGCAAGCCCTGTATGGTTATGATCCAGTTTTGACAGAGGAAGATTTGGAACCAAACATTATTGTAAAGAGTTGTTGTGG CTCAAGAAAGAAGGGAAGGGGTGGTAATAAGAAGTATATTGACAAAAAGAGGGCAATGAAAAGAACTGAATCCACCGTCCCCATTTTCAATATGGAGGAC ATTGAGGAGGGTGTTGAAGGATATGATGATGAGAGGTCACTGCTTATGTCGCAGAAGAGTTTAGAAAAGCGTTTTGGTCAGTCACCAGTTTTTATTGCAG CTACCTTCCAGGAACAGGGAGGCATTCCACCGACAACCAATCCTGCAACTCTTTTGAAAGAAGCTATCCATGTTATTAGCTGTGGATATGAAGACAAGAC TGAATGGGGCAAAGAGATTGGATGGATCTATGGTTCTGTTACAGAAGATATTTTGACCGGGTTCAAGATGCATGCTCGTGGTTGGATATCAATCTATTGC ATGCCTCCTCGCCCAGCATTTAAGGGGTCTGCTCCTATCAATCTTTCTGATCGTTTGAACCAGGTTCTTCGATGGGCCTTGGGATCTATTGAGATTTTAC TGAGCAGGCATTGCCCCATATGGTATGGATACAATGGAAGATTAAAGCTTTTGGAGAGGCTAGCATATATTAATACCATCGTGTACCCACTAACTTCTCT TCCACTCCTTGCTTACTGTGTACTTCCTGCTGTTTGCCTTGTCAGTGGAAAATTTATTATTCCTGAGATAAGTAACTATGCCAGCATGTGGTTCATTCTG CTTTTCATCTCCATTTTTGCTACTGGAATACTTGAGCTTAGATGGAGTGGAGTTGGTATTGAAGACTGGTGGAGGAATGAACAATTCTGGGTCATCGGTG GTACATCAGCTCATCTCTTTGCCGTCTTTCAAGGACTTTTGAAGGTGCTTGCAGGTATTGATACCAACTTCACTGTCACTTCAAAGGCATCTGATGAAGA TGGGGATTTTGCAGAGCTTTATGTGTTCAAATGGACATCTCTTCTCATCCCTCCAACCACAGTCATTTTACTAAACATGGTGGGTATTGTGGCTGGTGTG TCCTATGCCATAAACAGTGGATACCAGTCATGGGGTCCTCTCTTTGGCAAGCTCTTCTTTGCTATTTGGGTCATTGCCCATTTGTATCCTTTCCTCAAGG GTTTGTTGGGTCGGCAAAATCGTACGCCAACAATTGTCATTGTCTGGTCTATTCTCCTTGCCTCCATTTTCTCCTTGCTATGGGTGCGCATCGACCCCTT CACCTCAGACTCCACAAAAGCTGCCGCAAATGGCCAATGTGGAATCAACTGCTAG
AA sequence Show only first row Show all	>Potri.006G251900.3 pacid=42768634 polypeptide=Potri.006G251900.3.p locus=Potri.006G251900 ID=Potri.006G251900.3.v4.1 annot-version=v4.1 MEANAGMVAGSYRRNELVRIRHDSDSAPKPLKNLNGQTCQICGDNVGVTENGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYRRHKGSPRVDGD EDEDDVDDLENEFNYAQGIGKARRQWQGEDIELSSSSRHESQPIPLLTNGQPVSGEIPCATPDNQSVRTTSGPLGPAERNVNSSPYIDPRQPVHVRIVDP SKDLNSYGLGNVDWKERVEGWKLKQDKNIMQMTNRYPEGKGDIEGTGSNGDELQMADDARQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRVTHPV KDAYGLWLTSVICEIWFALSWLLDQFPKWMPINRETYLDRLALRYDRDGEPSQLAPIDIFVSTVDPLKEPPIVTANTVLSILAVDYPVDKVSCYVSDDGS AMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDH PGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYIQFPQRF DGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGRGGNKKYIDKKRAMKRTESTVPIFNMED IEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFQEQGGIPPTTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYC MPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSLPLLAYCVLPAVCLVSGKFIIPEISNYASMWFIL LFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFAELYVFKWTSLLIPPTTVILLNMVGIVAGV SYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDSTKAAANGQCGINC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32410		AtCESA1, RSW1, ...	RADIALLY SWOLLEN 1, cellulose ...		Potri.006G251900 [exp]	0	1	Pt-CESA4.4
AT1G55790			Domain of unknown function (DU...		Potri.011G141700 [exp]	2.00	0.8411
AT3G14470			NB-ARC domain-containing disea...		Potri.004G170000 [exp]	4.69	0.8285
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.003G218000 [exp]	5.19	0.8284
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	10.90	0.8007
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.008G091300 [exp]	11.61	0.7772
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	14.14	0.7639
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.004G069700 [exp]	17.49	0.7945
AT4G27190			NB-ARC domain-containing disea...		Potri.001G445150 [exp]	18.57	0.8041
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	21.90	0.7964
					Potri.001G213100 [exp]	25.25	0.7525

Compare expression of checked genes

Potri.006G251900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.