Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25530 778 / 0 AFG1-like ATPase family protein (.1) AT4G28070 181 / 2e-50 AFG1-like ATPase family protein (.1.2) AT4G30490 177 / 6e-49 AFG1-like ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G100900 [exp] 180 / 8e-50 AT4G28070 713 / 0.0 AFG1-like ATPase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002025 [exp] 782 / 0 AT2G25530 810 / 0.0 AFG1-like ATPase family protein (.1) Lus10015485 [exp] 168 / 7e-44 AT2G23890 790 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10019962 [exp] 152 / 1e-38 AT2G23890 859 / 0.0 HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase (.1) Lus10002903 [exp] 56 / 4e-09 AT1G74400 105 / 2e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF03969 [poplar] [flax] AFG1_ATPase AFG1-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.006G252300.1 pacid=42769768 polypeptide=Potri.006G252300.1.p locus=Potri.006G252300 ID=Potri.006G252300.1.v4.1 annot-version=v4.1 ATGAGGAGAGGAATTTCTTCACTAAAATCCCTAGGGTTTGTTAAAAAACCAACAATATCAAACAAAATTTTCTCGATTGCCCTTCGCTTTCACTCTAATT CTCCTCCTAGTCTATTGGAGAATTACAAGAATTTGGTTGAGCAAGGGAAGGTACAGCATGATCCGTACCAGGAAAGAGTAGCTTTTGAATTAGAGAAATT GCTTTCTAGATTACAGCAATACGAGAAAGATATGGAGGATTATTACGTAAAGTTGGCGGAATGGGAGGAGAAGAGGGAGGAGGAGAGGCTGAAGCTTTTG GTCAAAGAAGCGAAGGAGAAGCAAGAAACTGGCGGAGGAGGAATCTGGACGTCAGTGAACAAGCAGAGGAATCGAATTTTGGAAAAATTTGCTATTTTCG GGAAAAAGGGAGCAGAAATAGAACCTGGAGTGGGTAGGTGGGTTTCATACTTAAATAGAGAGAGGAAATTGGATTCACTTGTTGGTCGTAGGCCGAGTGT TCCTCCAGCTCCGAAAGGATTGTACATTTACGGCAATGTTGGAAGTGGGAAGACGATGCTGATGGACATGTTTTATAGTGCGACTGAAGGAATGGCGAAA CATCGAATAAGGTTTCACTTTCATGAGGCTATGCTGAATATAAATGCACATATGCATAAGATTTGGAAGAATCAAGTAGAGGGAAAATCTTTGCAGTCAA ACATATCTAGTTGGATTACAAATCTTCCCTTTGATATGAAAGTCAAGGAGTGGTTAGTTGCTGAAGAGAGATATAAGCAAGATGTGCAGATGAAAAACAT TCTTCTTGCTGTAGCAGATGAGTTTCTCATGGACAAGCAAGCAGATGAAAGAGGGGCTAGCATTCTTTGCTTTGATGAAATACAGACTGTTGATGTATTT GCTATTGTGGCCTTATCCGGAATTCTAAGCAGATTGCTGACTACTGGAACAGTTCTTGTGGCCACCAGTAACCGAGCACCGAGGGAATTAAATCAGGATG GCATGCAGCGAGATATCTTTCAAAAATTGGTTTCAAAGCTGGAGGAGCACTGTGAGATAATTCTGATTGGAAGTGAGATTGATTATCGCCGTTTCATAGC ACAAAGATCTAATGACCAGGCTAACTACTTCTGGCCTTTGGAGAGCAGTGCTCTGATGGAGTTTGAGAAAATGTGGTGTCAGGTCACAAATCAGTTGGGA GGACAAATCACCTCTGAGACTATCCCAGTTATGTTTGGGAGAGTGTTGGATGTTCCTGAAAGCTGTAATGGAGTGGCAAAGTTCACGTTTGAGTATCTAT GTGGCCGGACGGTAGGTGCAGCAGATTATATTGCACTAGCAAAAAATTATCACACTGTCTTCATTTCTGATATTCCATTGATGAGCATGGAAAACCGTGA CAAGGCACGCAGATTCATCACTCTCATTGATGAGTTGTACAATCATCATTGCTGCCTATTTTGTTCTGCAGCTTCTTCTATTGATGACTTGTTTCAAGGA ACTGAAGAGGGTACACATTTTGACTTAGAAAGTTTCCAATTTGAAACAGAGACAGAAGGTGGCAAACTTCGCACAAATGTTTTAGCTGAAGGCAATGTAG GCTCGGGAGGTGTACCATCTGGGATAGTTTCTATGCTTTCTGGACAAGAAGAGATGTTTGCCTTCCGCAGAGCAGCTTCTCGTTTGATCGAAATGCAGAC ACCTCTGTACTTGGAAGGAGTTCGTAGTCTTCATCCTTATTTCCAGAAGCAACACCAAGGATTTGGAAATATTCTTTCAAGCAACCCGCAAGCTCGAGCT TCATCTTGA
AA sequence Show only first row Show all	>Potri.006G252300.1 pacid=42769768 polypeptide=Potri.006G252300.1.p locus=Potri.006G252300 ID=Potri.006G252300.1.v4.1 annot-version=v4.1 MRRGISSLKSLGFVKKPTISNKIFSIALRFHSNSPPSLLENYKNLVEQGKVQHDPYQERVAFELEKLLSRLQQYEKDMEDYYVKLAEWEEKREEERLKLL VKEAKEKQETGGGGIWTSVNKQRNRILEKFAIFGKKGAEIEPGVGRWVSYLNRERKLDSLVGRRPSVPPAPKGLYIYGNVGSGKTMLMDMFYSATEGMAK HRIRFHFHEAMLNINAHMHKIWKNQVEGKSLQSNISSWITNLPFDMKVKEWLVAEERYKQDVQMKNILLAVADEFLMDKQADERGASILCFDEIQTVDVF AIVALSGILSRLLTTGTVLVATSNRAPRELNQDGMQRDIFQKLVSKLEEHCEIILIGSEIDYRRFIAQRSNDQANYFWPLESSALMEFEKMWCQVTNQLG GQITSETIPVMFGRVLDVPESCNGVAKFTFEYLCGRTVGAADYIALAKNYHTVFISDIPLMSMENRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQG TEEGTHFDLESFQFETETEGGKLRTNVLAEGNVGSGGVPSGIVSMLSGQEEMFAFRRAASRLIEMQTPLYLEGVRSLHPYFQKQHQGFGNILSSNPQARA SS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25530			AFG1-like ATPase family protei...		Potri.006G252300 [exp]	0	1
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.018G013400 [exp]	7.07	0.6413
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	12.24	0.7629	ZFN3.2
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.016G001200 [exp]	31.12	0.6127
AT1G25420			Regulator of Vps4 activity in ...		Potri.008G121300 [exp]	60.79	0.5895
AT1G03250			unknown protein		Potri.019G046400 [exp]	61.79	0.6090
AT5G56180		ATARP8	actin-related protein 8 (.1.2)		Potri.001G471400 [exp]	117.80	0.6161	Pt-ARP8.1
AT1G54210		ATATG12, APG12,...	AUTOPHAGY 12 A, AUTOPHAGY 12, ...		Potri.001G169700 [exp]	118.08	0.6041
AT5G64170			dentin sialophosphoprotein-rel...		Potri.001G205800 [exp]	120.49	0.6093
AT4G09900		ATMES12	ARABIDOPSIS THALIANA METHYL ES...		Potri.013G104700 [exp]	156.99	0.5785
AT5G05710			Pleckstrin homology (PH) domai...		Potri.008G066700 [exp]	164.74	0.5484

Compare expression of checked genes

Potri.006G252300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.