Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21065 497 / 6e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G02980 475 / 3e-163 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 468 / 2e-160 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 466 / 5e-159 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G59720 465 / 7e-159 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G08070 468 / 1e-158 EMB3102, OTP82 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62890 459 / 2e-157 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G66520 455 / 3e-155 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G31920 451 / 1e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G37380 451 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168800 [exp] 505 / 3e-175 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G001000 [exp] 502 / 2e-173 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G071800 [exp] 501 / 8e-172 AT1G08070 606 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 493 / 3e-168 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 483 / 3e-166 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G135400 [exp] 479 / 4e-165 AT1G31920 738 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G040100 [exp] 483 / 1e-164 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G050200 [exp] 476 / 2e-163 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G065500 [exp] 476 / 2e-163 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002024 [exp] 528 / 0 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10005207 [exp] 478 / 1e-163 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10013319 [exp] 474 / 4e-163 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033026 [exp] 474 / 7e-161 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 469 / 7e-161 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029436 [exp] 461 / 2e-156 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 456 / 3e-154 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014298 [exp] 451 / 2e-153 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10018223 [exp] 452 / 2e-152 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 447 / 1e-150 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.006G252400.2 pacid=42769497 polypeptide=Potri.006G252400.2.p locus=Potri.006G252400 ID=Potri.006G252400.2.v4.1 annot-version=v4.1 ATGCTTGAAAGAAAAAAATTGCCCAATAAATTTACTTACCCTTTTGTTCTTAAGGCTTGTGCAGGTATCGGGAACTTGAATTTGGGGAAGTCGGTTCATG GATCAGTGATGAAATTTGGGTTTGGTGATGAAGTTAACGTGCAGAATACTTTGGTGCATATGTACTGTTGTTGTAGAGGTGGGGAAGGAGGGATTGAGTT TGCACGGAAGGTGTTTGATGAGATGTATAAGTCGGATTCTGTTTCTTGGAGTGCAATGATTGGTGGGTACGTGCGAGTGGGGAGGTCTAGCGATGCCATT AATTTGTTTAGGGAAATGCAAATCAAGGGGGTTTGTCCTGATGAGATTACTATGGTTTCGGTTTTGAGTGCGTGTACAGGTTTAGGTGCGCTCGAGTTAG GGAAGTGGGTGGAGTCTTATGTTGAGAAGGAGAGGGTACAGAAGAATGTTGAGCTTAGCAATGCGTTGATTGATATGTTTGCAAAGTGTGGTGATGTTGA TAAAGCAACAAACTTGTTTAGGAGTATGAGAGAGAGGAACATTGTTTCGTGGACTTCAGTAATTGGTGGTTTAGCGATGCACGGTCGTGGTGTAGAGGCT GTTGCTGTGTTCGAGGAGATGGTAAGAAGTGGAGTGACCCCAGATGATGTTGTGTTTATCGGACTGCTCTCTGCTTGTAGTCATTCCGGGTTAGTTGATA AAGGGAAAGGATATTTTGATTCAATGAGAAAGGATTTTAGCATTGTACCTAAGATTGAACACTATGGATGCATGGTAGATATGTTATGCAGGGCAGGACT GGTAAAAGAAGCACTGAAGTTTGTTCAAGAAATGCCTATTGATCCTAACCCTGTTGTTTGGCGTACTCTGATTAATGCTTGTCGTGCTCATGGTGAGCTC AAGCTTGGAGAGAAAATTACCAGACAGCTAATCAGAAACGAGCCCATGCATGAATCCAATTATGTGTTACTGTCCAACATCTATGCAAAAATGTCCGATT GGGAAAAGAAAACCAGGATTAGAGAGGCGATGGACATGAAAGGGATGAAAAAGATCCCTGGGAGCACTATGATTGAGTTGGACAACGAAATTTATGAATT TGTGGCTGGAGATAAATCACATGCGCAGTCCAAAGAAATATATGAGATGGTGGATGAGATGGGGAAGGAGATGAAGAGGGCTGGATATATGCCAACCACT ACAGAGGTGTTGCTTGATATCGATGATGAAGATAAGGAAGATACATTAAATAGGCATAGTGAAAAGCTGGCTATTGCTTTTGCCCTTCTGAATACGCCAC CTGGAACTCTTATTCGGATTGTGAAGAACTTGCGAGTTTGTGATGATTGCCACTCTGCTAGCAAGTTTATCTCCAAGATTTATAACCGAGAAATAGTAGT GAGAGATCGAAACCGGTTTCATCATTTTAAGAATGGTCTGTGCTCATGTAGAGATTTCTGGTGA
AA sequence Show only first row Show all	>Potri.006G252400.2 pacid=42769497 polypeptide=Potri.006G252400.2.p locus=Potri.006G252400 ID=Potri.006G252400.2.v4.1 annot-version=v4.1 MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRGGEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAI NLFREMQIKGVCPDEITMVSVLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERNIVSWTSVIGGLAMHGRGVEA VAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKGYFDSMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGEL KLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIELDNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTT TEVLLDIDDEDKEDTLNRHSEKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKNGLCSCRDFW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.006G252400 [exp]	0	1
AT4G39952			Pentatricopeptide repeat (PPR)...		Potri.005G074000 [exp]	4.24	0.8565
AT1G74350			Intron maturase, type II famil...		Potri.005G063750 [exp]	7.28	0.8662
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.015G034900 [exp]	9.64	0.7918
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	10.58	0.8073
AT3G58590			Pentatricopeptide repeat (PPR)...		Potri.019G091000 [exp]	13.11	0.8497
AT1G56690			Pentatricopeptide repeat (PPR)...		Potri.013G005400 [exp]	13.22	0.8466
AT2G31600			unknown protein		Potri.007G126300 [exp]	21.77	0.7338
AT4G15570		MAA3	MAGATAMA 3, P-loop containing ...		Potri.017G056700 [exp]	24.28	0.8161
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	28.56	0.8231
AT3G55200		AtSAP130a	Arabidopsis thaliana spliceoso...		Potri.008G048900 [exp]	29.79	0.7661

Compare expression of checked genes

Potri.006G252400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.