Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51940 325 / 5e-103 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) AT3G21630 296 / 4e-92 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) AT3G24540 226 / 1e-66 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT3G58690 221 / 3e-66 Protein kinase superfamily protein (.1) AT4G02010 225 / 2e-64 Protein kinase superfamily protein (.1) AT1G52290 217 / 2e-63 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT3G24550 220 / 3e-63 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT3G23750 224 / 5e-63 Leucine-rich repeat protein kinase family protein (.1) AT2G28590 213 / 1e-62 Protein kinase superfamily protein (.1) AT3G20530 211 / 1e-62 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G081601 [exp] 345 / 7e-111 AT1G51940 337 / 5e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.T125208 [exp] 344 / 1e-110 AT1G51940 336 / 9e-107 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.008G187500 [exp] 337 / 8e-108 AT1G51940 362 / 7e-117 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.001G190200 [exp] 334 / 3e-106 AT1G51940 824 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Potri.002G226600 [exp] 284 / 2e-87 AT3G21630 697 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G156400 [exp] 275 / 4e-84 AT3G21630 678 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.011G010000 [exp] 275 / 7e-84 AT3G21630 673 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Potri.014G143100 [exp] 219 / 4e-65 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 226 / 9e-65 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026689 [exp] 354 / 6e-114 AT1G51940 348 / 4e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10004625 [exp] 352 / 4e-113 AT1G51940 347 / 7e-111 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10006841 [exp] 324 / 4e-102 AT1G51940 812 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10037586 [exp] 323 / 1e-101 AT1G51940 807 / 0.0 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10027677 [exp] 321 / 1e-101 AT1G51940 320 / 7e-101 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein (.1) Lus10035301 [exp] 278 / 2e-85 AT3G21630 578 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10030022 [exp] 274 / 4e-84 AT3G21630 692 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10035302 [exp] 271 / 1e-79 AT3G21630 706 / 0.0 LYSM DOMAIN RECEPTOR-LIKE KINASE 1, chitin elicitor receptor kinase 1 (.1) Lus10040050 [exp] 224 / 3e-67 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 224 / 4e-67 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0187 [poplar] [flax] LysM PF01476 [poplar] [flax] LysM LysM domain
Representative CDS sequence Show only first row Show all	>Potri.006G252600.2 pacid=42767953 polypeptide=Potri.006G252600.2.p locus=Potri.006G252600 ID=Potri.006G252600.2.v4.1 annot-version=v4.1 ATGTGCTCTCCGTATTTTGTAAATATGAACCCTTTTGTTAGTTTTGTGATTTGGATCTCTCTCTTGAGTTCTTTCCATAGTTTTCATGCCTCTCCAATGC AATGCAAAGTGTCTTTAAATGAATCATGTCCTGCTTCATTGTACTACTATGTTCCAAATACAATGAGAAGTCTTGATGAAACAGCTTCTTTATTCAATGT GGATAATGATGCAGTAAAGAGAACTATTGATGGTTTCCTGATTATGATAAACTGCAGCTGTCTGGCTGAGCACAGATTCTTCACTTGGCACATGGATTAC AAGGTCCAAAAGGGGGATACATGGAACAGCATTTCGTCGAAATTCGGGTTCTTTGTGGTGGTGGCAATGTCAGAAAAGGTGTTGATTCCATCGGTAATTG TGACTCTTGATGTTTTATGTGGCTGTTCTAACAACGCAGACATGGTAACATACAAGGTTCAAAATGGAGATACTGTGTTTACAATCTGTTCTCGGTTTAA AGCTAATGAAACTAAGACTGTCTTATTGAATGGGCTAGACAATCCAGACAGTATCCACGAGAGAGATATTCTGTTTATCCCCACACCAGCTGGCTTTAAT AACCTTACTTCCATTGATTATCACAACCAAGATATGAAGACCAAAAAAACATCAAAATCTCGAATTTTTATTGTGGTTGGAGCCATTTCAGCTGCTTTAG TTGTCGTACTATTGTCGATCCTACTTGTATTTTGGAAAAACCATATGAAGAAGCGAGCTCGACAACCGATAGCTTCCTCAAGGAGATTGAATTGCTTGCA CTGTTATCTTGCATCATGTCCTCAGCGTAGAAAATTTGAAGAAAGCATGGTTTCTTCAATCGGTTCAGACAAAGCTACTGTTTTACCGTACAATGAAATA CGTGAAGCCACTTCCAACTTTAGCAGATCTTTAATAATTGGCCAAGGATCTTACGGATTAGTCTACCTCGGAAAACTACGAGGAACTGATGTGGCCATCA AGCAGATGAAAGATACAAACTCCAAAGAGTTTTTGTCAGAGTTAAATATTCTTTGTAAAGTTCATCACATAAACTTGATCGAGCTTATTGGATATGCGGC TGGTGGAGAGTCCTTGTTTCTTGTTTATGAATTTGCCCAAAACGGTGCATTGAGTAATCATCTGCACAATCCTGCATTAAGAGGTCATAAACCTCTCCCT TGGACTACACGAGTTCAGATTGCTCTTGATGCAGCTAAAGGTCTTGAGTATATACATGAACACACAAAACCTTACTATGTCCATCGAGATATCAAGCCAA GCAATATTCTCTTAGACTCCAATTTCCACGCAAAGATTGCAGATTTTGGGCTGGTAAAGTTATCGGAACAATCTCCAGATGCTGGAGGTGCAGCAGCATC TAGAATTGTTGGCACATTTGGTTACCTTGCACCTGAGTATGTTCGAGATGGACATGTGACCGCAAAGAGCGATGTCTATTCCTTCGGTGTTGTTCTTATG GAATTACTTACTGGTCAGCCAGCATTAAGTAAAGATGCAAGTCCTGAAAATGAAAAGCTCAGTGAACATCGTTCTGTGGTGCAATACATGCTGTCAGCAT TGAATGATAGCCAGGACTCTTTCGACGAGCTGGCCAAATGCATTGATCCGAACCTGACCTCCTACGACAAAGATTCACTCTATGAGATGGCCCTCTTGTC CAAGGACTGTGTTGATGACAATTGGAAACGGCGTCCTGATATGAGTAGAGTTGCGTTACGCCTTTCACACATACTCTCAAGCTCCAGAGAGTGGGAGGAA CTATAG
AA sequence Show only first row Show all	>Potri.006G252600.2 pacid=42767953 polypeptide=Potri.006G252600.2.p locus=Potri.006G252600 ID=Potri.006G252600.2.v4.1 annot-version=v4.1 MCSPYFVNMNPFVSFVIWISLLSSFHSFHASPMQCKVSLNESCPASLYYYVPNTMRSLDETASLFNVDNDAVKRTIDGFLIMINCSCLAEHRFFTWHMDY KVQKGDTWNSISSKFGFFVVVAMSEKVLIPSVIVTLDVLCGCSNNADMVTYKVQNGDTVFTICSRFKANETKTVLLNGLDNPDSIHERDILFIPTPAGFN NLTSIDYHNQDMKTKKTSKSRIFIVVGAISAALVVVLLSILLVFWKNHMKKRARQPIASSRRLNCLHCYLASCPQRRKFEESMVSSIGSDKATVLPYNEI REATSNFSRSLIIGQGSYGLVYLGKLRGTDVAIKQMKDTNSKEFLSELNILCKVHHINLIELIGYAAGGESLFLVYEFAQNGALSNHLHNPALRGHKPLP WTTRVQIALDAAKGLEYIHEHTKPYYVHRDIKPSNILLDSNFHAKIADFGLVKLSEQSPDAGGAAASRIVGTFGYLAPEYVRDGHVTAKSDVYSFGVVLM ELLTGQPALSKDASPENEKLSEHRSVVQYMLSALNDSQDSFDELAKCIDPNLTSYDKDSLYEMALLSKDCVDDNWKRRPDMSRVALRLSHILSSSREWEE L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51940			protein kinase family protein ...		Potri.006G252600 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G106000 [exp]	2.82	0.8896	PtrAMT4-5
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	23.57	0.8674
AT5G64260		EXL2, MSJ1.10	EXORDIUM like 2 (.1)		Potri.005G163000 [exp]	24.33	0.8681
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	28.46	0.8679	GER2.33
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118800 [exp]	32.09	0.8559
					Potri.001G297101 [exp]	32.86	0.8588
AT1G72430			SAUR-like auxin-responsive pro...		Potri.003G071000 [exp]	35.41	0.8048
					Potri.005G061780 [exp]	40.54	0.8608
AT3G28860		ABCB19, ATMDR11...	P-GLYCOPROTEIN 19, MULTIDRUG R...		Potri.001G165000 [exp]	43.15	0.8595
AT5G24090		ATCHIA	chitinase A (.1)		Potri.002G242000 [exp]	47.41	0.8590	Pt-CHI3.10

Compare expression of checked genes

Potri.006G252600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.