Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44840 297 / 5e-98 Pectin lyase-like superfamily protein (.1) AT4G35670 286 / 9e-94 Pectin lyase-like superfamily protein (.1) AT3G15720 285 / 2e-92 Pectin lyase-like superfamily protein (.1.2) AT5G27530 285 / 3e-92 Pectin lyase-like superfamily protein (.1) AT5G17200 281 / 2e-91 Pectin lyase-like superfamily protein (.1) AT5G44830 263 / 2e-85 Pectin lyase-like superfamily protein (.1) AT4G32375 256 / 8e-81 Pectin lyase-like superfamily protein (.1) AT1G80170 236 / 1e-73 Pectin lyase-like superfamily protein (.1) AT5G14650 227 / 4e-70 Pectin lyase-like superfamily protein (.1) AT1G56710 223 / 2e-68 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028700 [exp] 393 / 1e-134 AT5G27530 362 / 2e-121 Pectin lyase-like superfamily protein (.1) Potri.012G119700 [exp] 291 / 1e-95 AT5G17200 356 / 1e-120 Pectin lyase-like superfamily protein (.1) Potri.015G088600 [exp] 241 / 6e-76 AT1G70500 323 / 1e-106 Pectin lyase-like superfamily protein (.1) Potri.001G346800 [exp] 226 / 3e-69 AT5G14650 506 / 5e-178 Pectin lyase-like superfamily protein (.1) Potri.017G006200 [exp] 219 / 7e-67 AT3G59850 503 / 7e-178 Pectin lyase-like superfamily protein (.1) Potri.008G211900 [exp] 218 / 3e-66 AT1G23460 638 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G171900 [exp] 216 / 5e-66 AT1G80170 506 / 1e-178 Pectin lyase-like superfamily protein (.1) Potri.017G005800 [exp] 212 / 7e-65 AT3G59850 499 / 2e-177 Pectin lyase-like superfamily protein (.1) Potri.008G010700 [exp] 211 / 1e-64 AT3G59850 454 / 7e-160 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032875 [exp] 320 / 1e-106 AT3G15720 342 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10040610 [exp] 299 / 1e-97 AT5G17200 346 / 7e-116 Pectin lyase-like superfamily protein (.1) Lus10036035 [exp] 270 / 9e-88 AT3G15720 339 / 3e-114 Pectin lyase-like superfamily protein (.1.2) Lus10016940 [exp] 267 / 2e-85 AT5G17200 320 / 6e-106 Pectin lyase-like superfamily protein (.1) Lus10002727 [exp] 250 / 1e-79 AT3G15720 254 / 9e-81 Pectin lyase-like superfamily protein (.1.2) Lus10014826 [exp] 252 / 5e-79 AT5G17200 301 / 1e-97 Pectin lyase-like superfamily protein (.1) Lus10029139 [exp] 224 / 3e-69 AT1G23460 574 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10019711 [exp] 225 / 5e-69 AT3G07970 461 / 1e-160 QUARTET 2, Pectin lyase-like superfamily protein (.1) Lus10029121 [exp] 218 / 5e-66 AT3G26610 566 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10029511 [exp] 216 / 3e-65 AT3G07970 480 / 1e-167 QUARTET 2, Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.006G252900.1 pacid=42768922 polypeptide=Potri.006G252900.1.p locus=Potri.006G252900 ID=Potri.006G252900.1.v4.1 annot-version=v4.1 ATGCAAGCTACTGTTTTTATCAGCTTTTTTATCCTATGCATCGCTGTGTCTAGTTTCGGCATTGGACATAGCCAGAAAGCTTTTGATGTGGTTCATTTTG GTGCCGTAGGAAATGGCCAGACTGATGACTCTGATGCTTTTACAAAAGCATGGGGAGCTCTGTGTGGAGCGAGTGGAGGCACACCAACACTTGTAATACC ACCTGGCCGTGCATTTTCATTGAAACCTGTAAAATTTGAAGGTCCTTGCAAGTCCAACAGTGTTCACATTCAGGTAGCAGGGAACATTGTAGCTCCGAGC ACCGTTGCCGGATGGGGTGGCTGTGGAATTCTGTTCTGGCTATGTTTCTCTAACGTAAACGGCCTGGTCCTGGATGGATCAGGCCATATTGATGGTCGGG GCTCACAGTGGTGGAATCATGCTCTGCTCTTCAACAACAACAATAACCTTAAATTAAGTGGACTTAATGTTGTCAACAGTCCGAGGAGCCACGTCAACTT GAACGATTGCAAGGGTGTCTCTATCTCCGGCCTTAAAATCACTGCACCTGGAAACAGTCCTAACACTGATGGGATCGACGTGTCTTCTTCAAGCCATGTC AGCATAGTAGACTCTACCATAGGAACAGGTGATGATTGTATTGCTATAAAGGGGGGCTGCTCCAACATCAATATTACTGGCATCAACTGCGGACCAGGTC ATGGAATTAGCATAGGAAGTCTAGGAGAGAATGGAGCTACTGAACAAGTGGAGGAAGTCCATGTGCGAAATTGTAACTTCACCGGAACTGAGAATGGAGC AAGAATCAAGACAGTCCCGGGGGGATCAGGGTATGTTAGGAGGATCACATTCGAGCAAATAACGCTTAATGCAGCTGGAAGCCCTATTATAATTGACCAG CACTACTGCGATGGGAAGAAAGAGGGCTGCCCCGACCAGCCAAAGGCAGTAGCGGTGAGCGACGTGACATTCACCGGTGTCCGAGGAACATCTTCTGATG AGCAAGTAATCACGTTGGATTGTGCAGCAATAGGTTGCAATAACATTAGAATGGTTCAAGTCGCTATCACATCATCAGTTGCTGGGAAGCGAAGAACAGC ATTTTGCAGCAATGCTCATGGAACATCCGTCTCCACAGCACCCGCGGTTCCATGCCTCTCAGGGAGAGCATTTGCTAGGAAGTTCTTGACACATTGA
AA sequence Show only first row Show all	>Potri.006G252900.1 pacid=42768922 polypeptide=Potri.006G252900.1.p locus=Potri.006G252900 ID=Potri.006G252900.1.v4.1 annot-version=v4.1 MQATVFISFFILCIAVSSFGIGHSQKAFDVVHFGAVGNGQTDDSDAFTKAWGALCGASGGTPTLVIPPGRAFSLKPVKFEGPCKSNSVHIQVAGNIVAPS TVAGWGGCGILFWLCFSNVNGLVLDGSGHIDGRGSQWWNHALLFNNNNNLKLSGLNVVNSPRSHVNLNDCKGVSISGLKITAPGNSPNTDGIDVSSSSHV SIVDSTIGTGDDCIAIKGGCSNINITGINCGPGHGISIGSLGENGATEQVEEVHVRNCNFTGTENGARIKTVPGGSGYVRRITFEQITLNAAGSPIIIDQ HYCDGKKEGCPDQPKAVAVSDVTFTGVRGTSSDEQVITLDCAAIGCNNIRMVQVAITSSVAGKRRTAFCSNAHGTSVSTAPAVPCLSGRAFARKFLTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44840			Pectin lyase-like superfamily ...		Potri.006G252900 [exp]	0	1
					Potri.001G169351 [exp]	9.89	1.0000
					Potri.001G196900 [exp]	14.00	1.0000
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	17.14	1.0000
					Potri.002G092751 [exp]	21.00	1.0000
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	21.93	1.0000
					Potri.003G015466 [exp]	22.13	1.0000
					Potri.003G072050 [exp]	23.21	1.0000
AT1G30190			unknown protein		Potri.004G065300 [exp]	26.19	1.0000
AT1G16730		UP6	unknown protein 6 (.1)		Potri.007G003700 [exp]	32.07	1.0000
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Potri.008G097800 [exp]	35.00	1.0000	CRC.1

Compare expression of checked genes

Potri.006G252900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.