Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11170 808 / 0 DEAD/DEAH box RNA helicase family protein (.1.2) AT5G11200 808 / 0 DEAD/DEAH box RNA helicase family protein (.1.2.3) AT2G45810 268 / 2e-84 DEA(D/H)-box RNA helicase family protein (.1) AT3G61240 263 / 5e-83 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT4G00660 258 / 4e-81 ATRH8 RNAhelicase-like 8 (.1.2) AT1G72730 247 / 7e-78 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 244 / 2e-76 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 237 / 7e-74 EIF4A-2 eif4a-2 (.1.2) AT3G19760 235 / 4e-73 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT1G51380 226 / 9e-70 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028600 [exp] 848 / 0 AT5G11170 807 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2) Potri.002G157500 [exp] 262 / 1e-82 AT4G00660 817 / 0.0 RNAhelicase-like 8 (.1.2) Potri.014G081100 [exp] 259 / 3e-81 AT4G00660 822 / 0.0 RNAhelicase-like 8 (.1.2) Potri.005G093900 [exp] 244 / 7e-77 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.001G197900 [exp] 243 / 3e-76 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 243 / 3e-76 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 243 / 4e-76 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.007G070000 [exp] 241 / 2e-75 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.003G043700 [exp] 240 / 5e-75 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014260 [exp] 821 / 0 AT5G11200 794 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10025960 [exp] 817 / 0 AT5G66150 1097 / 0.0 Glycosyl hydrolase family 38 protein (.1) Lus10002021 [exp] 799 / 0 AT5G11200 768 / 0.0 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10002905 [exp] 442 / 9e-153 AT5G11200 423 / 5e-145 DEAD/DEAH box RNA helicase family protein (.1.2.3) Lus10017804 [exp] 264 / 4e-83 AT4G00660 854 / 0.0 RNAhelicase-like 8 (.1.2) Lus10014783 [exp] 260 / 2e-81 AT4G00660 853 / 0.0 RNAhelicase-like 8 (.1.2) Lus10030377 [exp] 256 / 3e-80 AT4G00660 850 / 0.0 RNAhelicase-like 8 (.1.2) Lus10017407 [exp] 231 / 2e-71 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10010206 [exp] 224 / 2e-68 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10006878 [exp] 218 / 3e-66 AT3G13920 787 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.006G253100.1 pacid=42769783 polypeptide=Potri.006G253100.1.p locus=Potri.006G253100 ID=Potri.006G253100.1.v4.1 annot-version=v4.1 ATGGGAGAAACAAGAGACAACGACACTTACGAGGAGGAGCTTCTAGATTATGAAGAAGAAGACGAGAAAGCACCTGACTCCGTCGGCGCTAAAGTTAACG GCGAAGCCGTTAAGAAAGGATATGTTGGGATTCACAGTTCGGGATTCAGAGATTTCCTTTTGAAGCCAGAGCTGCTTAGGTCTATTGTCGACTCGGGTTT TGAGCATCCTTCTGAAGTGCAACATGAATGTATCCCTCAAGCCATCTTGGGGATGGATGTCATCTGCCAAGCTAAATCTGGAATGGGAAAGACTGCGGTT TTTGTTCTGTCTACTCTTCAGCAAATTGAGCCTACCTCTGGACAAGTTATTGCCCTTGTTCTATGTCACACTAGAGAGTTGGCTTACCAGATCTGCCACG AGTTTGAGAGGTTCAGTACTTACTTGCCTGACACCAAGGTTGCTGTTTTCTATGGTGGTGTCAATATCAAAACTCACAAGGATCTACTGAAAAATGAATG TCCCCATATTGTTGTTGGAACACCCGGAAGAATCCTGGCACTTGCTAGAGATAAGGACCTTTCTTTGAAGAATGTCAGACATTTTATCCTTGATGAATGT GACAAAATGCTTGAATCACTCGACATGAGGAGAGATGTTCAGGAGATTTTCAAGATGACTCCTCATGATAAGCAGGTTATGATGTTTTCTGCAACGCTCA GCAAAGAAATCCGCCCAGTTTGCAAGAAATTTATGCAAGATCCAATGGAAATTTACGTCGATGATGAAGCCAAGTTGACCCTCCATGGTCTTGTGCAGCA CTACATCAAACTGACTGAGCTGGAGAAAAACAGAAAGTTAAATGATCTTCTTGATGCACTGGACTTCAATCAAGTTGTTATCTTTGTTAAAAGTGTGAGC AGAGCAGCTGAGCTGAACAAGTTACTAGTGGAGTGTAATTTCCCCTCCATTTGCATACATTCTGGCATGTCACAGGAAGAAAGGTTGATGCGCTACAAGG GTTTCAAGGAGGGTCATAAAAGGATTCTTGTTGCCACTGACTTGGTTGGCAGGGGTATTGATATTGAACGTGTCAACATTGTCATTAACTATGACATGCC AGACTCAGCTGACACTTACTTGCACAGGGTTGGCAGAGCTGGTAGGTTTGGCACAAAAGGCCTTGCAATTACCTTTGTATCATCAGCTTCGGATTCTGAT GTTCTCAACCAGGTTCAAGAGAGGTTTGAGGTGGATATAAAGGAGCTTCCTGAGCAAATTGATACATCTACATATATGCCATCTTAA
AA sequence Show only first row Show all	>Potri.006G253100.1 pacid=42769783 polypeptide=Potri.006G253100.1.p locus=Potri.006G253100 ID=Potri.006G253100.1.v4.1 annot-version=v4.1 MGETRDNDTYEEELLDYEEEDEKAPDSVGAKVNGEAVKKGYVGIHSSGFRDFLLKPELLRSIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAV FVLSTLQQIEPTSGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDEC DKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVS RAAELNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSD VLNQVQERFEVDIKELPEQIDTSTYMPS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.006G253100 [exp]	0	1
AT3G04610		FLK	flowering locus KH domain, RNA...		Potri.005G056100 [exp]	1.73	0.8976
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.006G277200 [exp]	3.46	0.8784
AT1G27390		TOM20-2	translocase outer membrane 20-...		Potri.001G054900 [exp]	4.58	0.8464	Pt-TOM20.1
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Potri.007G028300 [exp]	5.29	0.8906
AT5G11170			DEAD/DEAH box RNA helicase fam...		Potri.018G028600 [exp]	5.65	0.8772
AT1G36280			L-Aspartase-like family protei...		Potri.010G193400 [exp]	5.74	0.8882
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074000 [exp]	6.00	0.8502
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	7.48	0.8779
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	7.74	0.8468
AT1G07030			Mitochondrial substrate carrie...		Potri.009G077600 [exp]	8.94	0.8823

Compare expression of checked genes

Potri.006G253100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.