Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16080 173 / 6e-52 ATCXE17 carboxyesterase 17 (.1) AT1G68620 168 / 5e-50 alpha/beta-Hydrolases superfamily protein (.1) AT1G47480 148 / 1e-42 alpha/beta-Hydrolases superfamily protein (.1) AT2G03550 146 / 9e-42 alpha/beta-Hydrolases superfamily protein (.1) AT5G06570 146 / 1e-41 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G27320 141 / 1e-39 ATGID1C, GID1C GA INSENSITIVE DWARF1C, alpha/beta-Hydrolases superfamily protein (.1) AT1G19190 137 / 2e-38 alpha/beta-Hydrolases superfamily protein (.1) AT1G49650 138 / 3e-38 alpha/beta-Hydrolases superfamily protein (.1) AT3G48700 134 / 4e-37 ATCXE13 carboxyesterase 13 (.1) AT1G49660 131 / 4e-36 ATCXE5 carboxyesterase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028300 [exp] 488 / 3e-176 AT1G68620 199 / 1e-61 alpha/beta-Hydrolases superfamily protein (.1) Potri.018G028400 [exp] 209 / 7e-68 AT1G68620 100 / 3e-25 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G101400 [exp] 189 / 7e-58 AT5G16080 357 / 6e-123 carboxyesterase 17 (.1) Potri.017G113700 [exp] 174 / 2e-52 AT5G16080 358 / 3e-123 carboxyesterase 17 (.1) Potri.010G127600 [exp] 167 / 2e-49 AT5G16080 346 / 2e-118 carboxyesterase 17 (.1) Potri.008G118400 [exp] 166 / 5e-49 AT1G68620 345 / 4e-118 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104900 [exp] 158 / 8e-46 AT1G47480 320 / 1e-108 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G104300 [exp] 154 / 6e-45 AT3G48700 329 / 1e-112 carboxyesterase 13 (.1) Potri.009G155800 [exp] 153 / 2e-44 AT5G06570 310 / 4e-105 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002019 [exp] 394 / 1e-138 AT5G16080 218 / 1e-68 carboxyesterase 17 (.1) Lus10002907 [exp] 394 / 1e-138 AT5G16080 204 / 3e-63 carboxyesterase 17 (.1) Lus10033548 [exp] 173 / 7e-52 AT5G16080 330 / 3e-112 carboxyesterase 17 (.1) Lus10017587 [exp] 171 / 5e-51 AT5G16080 329 / 5e-112 carboxyesterase 17 (.1) Lus10036168 [exp] 165 / 9e-49 AT5G06570 321 / 2e-109 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10012073 [exp] 154 / 2e-44 AT3G48700 315 / 6e-107 carboxyesterase 13 (.1) Lus10027909 [exp] 150 / 3e-43 AT3G48690 311 / 2e-105 ARABIDOPSIS THALIANA CARBOXYESTERASE 12, alpha/beta-Hydrolases superfamily protein (.1) Lus10019882 [exp] 150 / 4e-43 AT2G03550 308 / 1e-104 alpha/beta-Hydrolases superfamily protein (.1) Lus10039162 [exp] 149 / 2e-42 AT5G23530 324 / 3e-110 carboxyesterase 18 (.1) Lus10015988 [exp] 148 / 2e-42 AT5G06570 346 / 5e-119 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF07859 [poplar] [flax] Abhydrolase_3 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Potri.006G253300.1 pacid=42769015 polypeptide=Potri.006G253300.1.p locus=Potri.006G253300 ID=Potri.006G253300.1.v4.1 annot-version=v4.1 ATACCTGGCTTCCTGCAAGTTTTTTCTGATGGGATGGTAAAACGGTTTGCCCCAGAAATCGTGCCTGCCTCGGCGGAGGAATCGTATTCCAATGGATTAA AGTTCAAGGACGTGGTCATTGACTCGTCTAAGCCGATAATTGCAAGGCTATTCCTTCCTGATACTCGGGGTTCTGCGAGTCAGCTTCCTGTTGTGGTTTA TTTTCATGGTGGTTGCTTTTGCTTTTGCTCAACCACATGGTTTGGGTTCCATCATTTTCTTGGAGACCTATCTAAGGCATCTCAATCCATTGTCCTATCT GTTGACTATCGTTTGGCACCGGAGAATCGCCTTCCAATAGCTTATGATGACTGTTTCAGTTCACTTGAATGGCTAATGTTTCTCTCTGGAGACAGTGCTG GAGGGAACATTACACACCATGTTGCTATCAGAGCAATGAGGAGTAATACTTGTCAGGTTAAAATCAAAGGATTGATGTTGATTCATCCTTGTTTCGGGAG TGAGAAAAGGACCATGAAAGAGACGGCTGAAGGGGCAGCAAGAGACGTGGTCATGAATGATATGTTCTGGGGTCTAAGTATACCTGAAGGATCAAATCGT GATTACTTTGGCTGTAATTTTGAGATGCAAGATGTATCCGCAGGTGAATGGAGTGAGTTTCCAGCGGTTATAGTTTATGTAGCTGGCTTGGATTTCTTGA ATGAAAGGGGAGCAATGTATGCACAGTTTTTGGCAAAAAAAGGGGTGAAAGAAGTGAAGTTGGTTGAAGCTGAGGGGCAACAGCATGTCTTTCATCTGCT CTATTCTGAATCTGAGGCGACTCGTTCGCTCCAAAAACAGATGAGCGAGTTCATGAAGAGCCACTAG
AA sequence Show only first row Show all	>Potri.006G253300.1 pacid=42769015 polypeptide=Potri.006G253300.1.p locus=Potri.006G253300 ID=Potri.006G253300.1.v4.1 annot-version=v4.1 IPGFLQVFSDGMVKRFAPEIVPASAEESYSNGLKFKDVVIDSSKPIIARLFLPDTRGSASQLPVVVYFHGGCFCFCSTTWFGFHHFLGDLSKASQSIVLS VDYRLAPENRLPIAYDDCFSSLEWLMFLSGDSAGGNITHHVAIRAMRSNTCQVKIKGLMLIHPCFGSEKRTMKETAEGAARDVVMNDMFWGLSIPEGSNR DYFGCNFEMQDVSAGEWSEFPAVIVYVAGLDFLNERGAMYAQFLAKKGVKEVKLVEAEGQQHVFHLLYSESEATRSLQKQMSEFMKSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Potri.015G064700 [exp]	1.73	0.7720
					Potri.005G071951 [exp]	3.16	0.7546
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.012G103200 [exp]	12.00	0.6727
AT5G09550			GDP dissociation inhibitor fam...		Potri.007G115300 [exp]	15.00	0.6882
AT3G22910			ATPase E1-E2 type family prote...		Potri.016G009101 [exp]	16.73	0.7009
					Potri.010G221301 [exp]	30.39	0.6654
AT5G20710		BGAL7	beta-galactosidase 7 (.1)		Potri.001G025800 [exp]	31.12	0.6330
					Potri.003G073750 [exp]	41.56	0.6274
					Potri.004G188950 [exp]	42.93	0.6265
					Potri.014G114801 [exp]	44.04	0.6265

Compare expression of checked genes

Potri.006G253300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.