Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20150 308 / 1e-105 ATSPX1 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) AT2G26660 304 / 7e-104 ATSPX2 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) AT5G15330 198 / 6e-62 ATSPX4 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) AT2G45130 167 / 6e-51 ATSPX3 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) AT4G11810 43 / 0.0002 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1) AT4G22990 41 / 0.0006 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) AT1G14040 41 / 0.0007 EXS (ERD1/XPR1/SYG1) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028200 [exp] 467 / 3e-168 AT2G26660 321 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Potri.006G069500 [exp] 324 / 2e-111 AT5G20150 359 / 8e-126 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.018G131500 [exp] 323 / 3e-111 AT5G20150 356 / 1e-124 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.002G143900 [exp] 201 / 1e-63 AT2G45130 276 / 1e-93 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.014G061400 [exp] 196 / 6e-62 AT2G45130 269 / 4e-91 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.017G086600 [exp] 167 / 7e-50 AT5G15330 335 / 4e-115 ARABIDOPSIS THALIANA SPX DOMAIN GENE 4, SPX domain gene 4 (.1) Potri.001G193200 [exp] 157 / 2e-47 AT5G20150 158 / 2e-48 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Potri.001G135950 [exp] 94 / 1e-23 AT2G45130 121 / 7e-35 ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX domain gene 3 (.1) Potri.010G069000 [exp] 44 / 0.0001 AT3G23430 1069 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002018 [exp] 414 / 5e-147 AT2G26660 308 / 2e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10002908 [exp] 410 / 2e-145 AT2G26660 309 / 1e-105 ARABIDOPSIS THALIANA SPX DOMAIN GENE 2, SPX domain gene 2 (.1) Lus10043272 [exp] 311 / 2e-106 AT5G20150 343 / 8e-120 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10030095 [exp] 310 / 3e-106 AT5G20150 356 / 8e-125 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10019415 [exp] 297 / 7e-99 AT5G20150 326 / 2e-110 ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX domain gene 1 (.1) Lus10009314 [exp] 44 / 0.0001 AT4G22990 941 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10006340 [exp] 43 / 0.0003 AT4G22990 1128 / 0.0 Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.1), Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein (.2) Lus10021164 [exp] 42 / 0.0006 AT3G23430 1066 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1) Lus10030439 [exp] 41 / 0.0007 AT1G14040 1127 / 0.0 EXS (ERD1/XPR1/SYG1) family protein (.1) Lus10011799 [exp] 41 / 0.0008 AT3G23430 1080 / 0.0 ARABIDOPSIS PHOSPHATE 1, phosphate 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03105 [poplar] [flax] SPX SPX domain
Representative CDS sequence Show only first row Show all	>Potri.006G253400.1 pacid=42767147 polypeptide=Potri.006G253400.1.p locus=Potri.006G253400 ID=Potri.006G253400.1.v4.1 annot-version=v4.1 ATGAAGTTCTGGAAGAGCTTAAGTAATTTAATAGAAGAAACGGTGCCGGATTGGAGAGATGAGTTTTTATCTTATAAAGACTTGAAGAAACAGTTGAAGT TAATTTATCCTAAAGATGGGGATAAGCCGCTGAATAAAAGGCCGAGATTGGATGATGATCAAATGGACGGTGGGGATGGCGATGGCGGTGAGGTGGAGAA GGAGGTGATTGATTTTGTTAGGGTTTTGGAGGATGAGATGGAAAAGTTTAATGCTTTTATTGTTGAGAAAGAAGAGGATTCTGTTATCAAATGGAAGGAG CTACAAGATGGAGTAGAGAAGGCGAAGGATTCGAATGAAGAGCTGATGAGAGTAGGGAGGGAGATAGTGGATTTTCATGGAGAGATGGTGTTGTTGGAGA ATTACAGTGCCCTTAACTACACAGGGCTAGTGAAGATATTGAAAAAATATGATAAGAGAAGTGGAGCTCTGGTTCGCATGCCCTTCATCCAAAGGGTAAT GCAACAGCCATTCTACACAACTCATGTACTTACCAAGCTTATTAAGGAGTGTGAGGCGATGCTTGATCGAGTTTTCTCTAGAAATGAACCATCAGTCTCA CCTCATGCAACTGAGGTAGAGAGCCATGACAACAAAACTTCAAATGCAATTGCAGAGAGGTCACTCAGAGTTCCCAACGAACTCCCAGAAATAGAATATA CGGAGAGCATGTACGTGAAACCAACACTGTCAGCACTTCGTGTCTTGAAGGAGATTCGGAGTGGAAGCTCGACTGTAAACGTGTATTCATTGCCCCCTTT GCAAAGCAATACTCAAGATGGGGATTGGAAGAAAGTTACTGTCTTGGAACAAACGGCCAAATAG
AA sequence Show only first row Show all	>Potri.006G253400.1 pacid=42767147 polypeptide=Potri.006G253400.1.p locus=Potri.006G253400 ID=Potri.006G253400.1.v4.1 annot-version=v4.1 MKFWKSLSNLIEETVPDWRDEFLSYKDLKKQLKLIYPKDGDKPLNKRPRLDDDQMDGGDGDGGEVEKEVIDFVRVLEDEMEKFNAFIVEKEEDSVIKWKE LQDGVEKAKDSNEELMRVGREIVDFHGEMVLLENYSALNYTGLVKILKKYDKRSGALVRMPFIQRVMQQPFYTTHVLTKLIKECEAMLDRVFSRNEPSVS PHATEVESHDNKTSNAIAERSLRVPNELPEIEYTESMYVKPTLSALRVLKEIRSGSSTVNVYSLPPLQSNTQDGDWKKVTVLEQTAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20150		ATSPX1	ARABIDOPSIS THALIANA SPX DOMA...		Potri.006G253400 [exp]	0	1
AT1G70000	MYB		myb-like transcription factor ...		Potri.008G191800 [exp]	2.82	0.8185
AT1G11360			Adenine nucleotide alpha hydro...		Potri.011G039800 [exp]	5.00	0.7900
AT5G16800			Acyl-CoA N-acyltransferases (N...		Potri.013G079900 [exp]	11.22	0.7887
AT1G75180			Erythronate-4-phosphate dehydr...		Potri.002G260900 [exp]	17.14	0.7440
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	19.59	0.7898
AT3G15040			Protein of unknown function, D...		Potri.006G209500 [exp]	23.66	0.7741
AT1G03290			unknown protein		Potri.014G139000 [exp]	26.72	0.8000
AT4G32020			unknown protein		Potri.018G022400 [exp]	28.56	0.7758
AT2G33550	Trihelix		Homeodomain-like superfamily p...		Potri.003G163000 [exp]	34.07	0.7799
AT4G17870		RCAR11, PYR1	regulatory component of ABA re...		Potri.001G142500 [exp]	35.91	0.7796

Compare expression of checked genes

Potri.006G253400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.