Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RDR6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49500 1739 / 0 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT1G14790 583 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 529 / 2e-168 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT2G05370 144 / 6e-40 unknown protein AT2G19930 112 / 1e-24 RNA-dependent RNA polymerase family protein (.1) AT2G19910 100 / 3e-21 RNA-dependent RNA polymerase family protein (.1) AT2G19920 97 / 3e-20 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G028100 [exp] 2184 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.008G136100 [exp] 596 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 588 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G105200 [exp] 583 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.010G104900 [exp] 579 / 0 AT1G14790 1276 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 561 / 1e-180 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.007G081300 [exp] 127 / 3e-29 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.006G164400 [exp] 124 / 1e-28 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002017 [exp] 1794 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 1316 / 0 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10019164 [exp] 552 / 3e-177 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 511 / 2e-161 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002909 [exp] 369 / 2e-118 AT3G49500 333 / 3e-106 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 327 / 3e-99 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 189 / 9e-53 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 105 / 1e-22 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1) Lus10034390 [exp] 70 / 4e-14 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 45 / 3e-05 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.006G253500.1 pacid=42767505 polypeptide=Potri.006G253500.1.p locus=Potri.006G253500 ID=Potri.006G253500.1.v4.1 annot-version=v4.1 ATGGAGACAGAAGGAAGTGCAAAGGAAACAGTGGTCACCCAAGTTAGTCTTGGTGGGTTTGACATTCATGTCACTGCAAAAGATCTTTTGGAATACTTGG AAAGAGAGATTGGACTTGTTTGGCGGTGTAGATTGAAAACATCATGGACCCCTCCTGAGTCCTATCCCAACTTTGAGATTACTGACATCACAAAGATCAC AAGAACAGAAGATTATAGGAGAGTGGAGCCCCATGCATTTGTGCATTTTGCGTTGCCTCAATCAGCAACTTGCGCTATTGATGCTGCAGACCGATGTGAG CTCTTCTTGAATAACAAAGGATTGAAGGCTAGTTTGGGGCCTGAAAATCCTTTCACCTTGAATCAGAGGAGGAGGAAAACAACTCCCTTTAAGCTATCTG GTGTGGGTGTTGAGATAGGGACCTTGGTTAGTCGTGACGAGTTCTTTGTTGGTTGGAGAGGACCTCCTACTGGTGTTGATTTTCTAGTGGATCCTTTTGA CGGAACATGCAGGTTTTGTTTCTCTAGAAATACTGCTTTCTCCTTCAAAAGTACAGCTGAACATGCTGTTATAAAATGTGATTTTAAAGTCGAGTTCCTA GTGAGAGACATTAATGAGATCAAACAGTACACAGAAACATCATGTCTAGTTCTCTTGCTGCAGCTGGCTTCTGCACCTCGGGTCTGGTATAGAACTGCTG ATGATGATATCGAAGTATCAGTTCCTTTTGATTTGTTGGATGATGACGATCCTTGGATCCGAACCACAGATTTTACAGCCAGTGGGGCTATTGGTCGGTG CCATTCTTATAGAGTTTCAATCCCACCTCGTCATGGTCCAAAGTTGAGAAAAGCTGTGGATTTTCTCAAGGAAAGGAGGGTGCAGGAGGAATACCTCAGA CGACCAATCAGGATTCGGGATGAACCAGACTTTGGAATGCCCATGACAGATCCTTTCTTTTGTATTCATCACAAGGAGGGAATAGCTTTTGATGTATTGT TTTTAGTGAATGCTGTCATGCATAAAGGCATATTCAATCAGCATCAATTATCAAATGACTTCTTTGACTTATTGAGAAATCAACCTACTGAAGTCAATGT GGCTGCACTGAAGCACATTTATCCTTACAGACGCCCAGTGTTTGATGCTTATAAGAAGCTGAAAGTTGCTCAAGAATGGTTGCTGAAGAACCCAAAATTT TTTAAAAATCAGAAAAAATTGGATGATATTGCAGAAATTAGAAGGTTGGTCATCACTCCAACTAAAGCTTACTGCCTTCCACCTGAAGTTGAACTCTCGA ATAGGGTTTTGAGGAAATACAAGGATGTTGCTGATCGGTTTCTCAGAGTTACCTTCATGGATGAGGGCTTGCAGACAATGAACTCAAATGCTCTAAACTA TTTTGCTGCTCCTATTGTCAGAGCCATCACTTCTTATTCCTTCCCTCAGAAAACAAGAATCTTCAAAAGAGTGAGGAGCATTTTGACTGAAGGGTTTTAT TTATGTGGTCGGAGATACTCCTTTTTGGCTTTCTCATCCAATCAATTGAGGGACCGTTCTGCTTGGTTTTTTGCTGAAGACAGAAACATAAATGTGATGG CTATTAAAAGTTGGATGGGAAAGTTCACCAATAAGAACATTGCAAAGTGTGCTGCAAGAATGGGTCAGTGTTTCTCCTCTACTTATGCAACTATAGAAGT TCCACCAGAGGAGGTTAATTCTGATCTTCCTGATATTAAGAGGAATGGCTATGATTTCTCCGATGGCATTGGCATGATCACTCCAGATCTTGCCAGGGAA GTTGCAGAGAAACTTAAATTTGATTTTGACCCCCCCTGTGCTTACCAAATCAGATATGCTGGTTGCAAAGGAGTCGTGGCTTGTTGGCCAGAGCAAGGTG ATGGCATCCGCCTATCTCTGAGGTCGAGCATGAACAAGTTCCAATCAAACCATACTATTTTGGAAATCTGCTCTTGGACTAGGTTTCAACCTGGTTTCTT AAACAGGCAGATAATTACATTGCTCTCAGCTCTCAACGTTCCTGATGCAGTCTTCTGGAAGATGCAGGAACTTATGGTCTCCAAGCTAAATCAAATGCTT GTGGACTCGGATGTCGCATTTGATGTCCTCACCGCATCATGTGCTGAGCAAGGGAATGTTGCTGCTATAATGTTGAGTGCAGGTTTCAAGCCTCAGAAGG AACCTCATTTGCGAGGCATGCTAACTTGTGTAAGAGCTGCACAGCTTTGGGGCCTCAGAGAAAAGGCTCGAATTTTTGTTCCATCTGGGAGATGGTTGAT GGGCTGCTTGGATGAGCTAGGGGTGCTTGAACAAGGTCAGTGCTTTATCCAAGTCTCCAACTCATATTTGGAAAACTGTTTTGTGAAGCATGGCTCAAAG TTTAGTGAGACCAAGAAAAATCTTCAAGTCGTCAAAGGGACTGTGGTAATAGCTAAGAATCCTTGTCTTCATCCTGGAGATATAAGGATTCTGGAAGCGG TTGATGCCCCAGGACTTCATCACTTGTATGATTGCCTTGTCTTCCCACAGAAAGGTGAAAGGCCCCATGCAAATGAAGCTTCTGGAAGTGACCTTGATGG GGACCTCTACTTTGTCACTTGGGATGAAAACCTTATTCCTCCTAGTAAGAGGAGCTGGATACCCATGCAGTATGATGCTGCAGAAGCCAAACAGCTTACT CGGCCTGTCAATCATCAGGACATTGTAGAATTCTTTGCAAAAAACATGGCGAACGAGAATTTAGGGGCAATTTGCAATGCACATGTAGTTCGTGCTGATT TGAGTGAGTATGGTGCTTTGGATGAGAAGTGCCTAACTCTAGCAGAGTTAGCGGCCACAGCTGTTGATTTTCCCAAGACTGGGAAAATTGTTTCCATGCC TTCGGATTTGAAACCCAAAATTTATCCAGATTTTATGGGGAAAGAGGAGCACCAGTCCTATAAATCAAAGAAAATTTTGGGAAGGCTATATCGCCAGATA AAAGATGCTTATGATGACGATGATGTGGCTGCATCTTCTGAGCTTAATTTTGTTCGTGGTGACATCCCATATGATTTGGATCTTGAAGTTCTGGGAGCTA CTGATTTTATCAGTGATGCATGGGATCGGAAGTGCTCATACGATGGGCAGCTGAATGGCCTTCTTGCTCAGTATAAAGTGAAGAGGGAAGAAGAGGTTGT AACAGGGCATGTATGGTCAATGCCGAAAGGCAGCAGTAGGAAGCAAGGGGACCTGAAAGAGAGGCTTAAACACTCTTACAATTGCTTAAAGAGAGAATTT AGGCAAGTCTTTGAGAAAATGGATTTGGACTTTGGGCAACTCGATGATGATGAAAAGAACATGCTTTATGAGCGGAAGGCGTCGGCTTGGTATCAGGTTA CCTACCATCCTCATTGGATTCAGAAGTCACTGGAGTTGCAAGATTCAGATGGTGCTGGTATTTCAGTTATGCTGAGCTTTGCTTGGATTGCAGCTGATTA CCTTGCTCGGATCAAGATTCGGCATAGCAGAATAGGAAATGTTGACTCTGCTAAGCCTGTGAATTCACTAGCCAAGTATCTTGCTGATAGGATGTGA
AA sequence Show only first row Show all	>Potri.006G253500.1 pacid=42767505 polypeptide=Potri.006G253500.1.p locus=Potri.006G253500 ID=Potri.006G253500.1.v4.1 annot-version=v4.1 METEGSAKETVVTQVSLGGFDIHVTAKDLLEYLEREIGLVWRCRLKTSWTPPESYPNFEITDITKITRTEDYRRVEPHAFVHFALPQSATCAIDAADRCE LFLNNKGLKASLGPENPFTLNQRRRKTTPFKLSGVGVEIGTLVSRDEFFVGWRGPPTGVDFLVDPFDGTCRFCFSRNTAFSFKSTAEHAVIKCDFKVEFL VRDINEIKQYTETSCLVLLLQLASAPRVWYRTADDDIEVSVPFDLLDDDDPWIRTTDFTASGAIGRCHSYRVSIPPRHGPKLRKAVDFLKERRVQEEYLR RPIRIRDEPDFGMPMTDPFFCIHHKEGIAFDVLFLVNAVMHKGIFNQHQLSNDFFDLLRNQPTEVNVAALKHIYPYRRPVFDAYKKLKVAQEWLLKNPKF FKNQKKLDDIAEIRRLVITPTKAYCLPPEVELSNRVLRKYKDVADRFLRVTFMDEGLQTMNSNALNYFAAPIVRAITSYSFPQKTRIFKRVRSILTEGFY LCGRRYSFLAFSSNQLRDRSAWFFAEDRNINVMAIKSWMGKFTNKNIAKCAARMGQCFSSTYATIEVPPEEVNSDLPDIKRNGYDFSDGIGMITPDLARE VAEKLKFDFDPPCAYQIRYAGCKGVVACWPEQGDGIRLSLRSSMNKFQSNHTILEICSWTRFQPGFLNRQIITLLSALNVPDAVFWKMQELMVSKLNQML VDSDVAFDVLTASCAEQGNVAAIMLSAGFKPQKEPHLRGMLTCVRAAQLWGLREKARIFVPSGRWLMGCLDELGVLEQGQCFIQVSNSYLENCFVKHGSK FSETKKNLQVVKGTVVIAKNPCLHPGDIRILEAVDAPGLHHLYDCLVFPQKGERPHANEASGSDLDGDLYFVTWDENLIPPSKRSWIPMQYDAAEAKQLT RPVNHQDIVEFFAKNMANENLGAICNAHVVRADLSEYGALDEKCLTLAELAATAVDFPKTGKIVSMPSDLKPKIYPDFMGKEEHQSYKSKKILGRLYRQI KDAYDDDDVAASSELNFVRGDIPYDLDLEVLGATDFISDAWDRKCSYDGQLNGLLAQYKVKREEEVVTGHVWSMPKGSSRKQGDLKERLKHSYNCLKREF RQVFEKMDLDFGQLDDDEKNMLYERKASAWYQVTYHPHWIQKSLELQDSDGAGISVMLSFAWIAADYLARIKIRHSRIGNVDSAKPVNSLAKYLADRM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G49500		SDE1, SGS2, RDR...	SUPPRESSOR OF GENE SILENCING 2...		Potri.006G253500 [exp]	0	1	RDR6.1
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	2.00	0.7103
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Potri.014G164400 [exp]	8.94	0.6552
					Potri.005G127650 [exp]	12.24	0.6397
AT1G64080		MAKR2	MEMBRANE-ASSOCIATED KINASE REG...		Potri.003G133500 [exp]	26.64	0.6826
AT1G22040			Galactose oxidase/kelch repeat...		Potri.005G170000 [exp]	42.24	0.5946
AT2G46550			unknown protein		Potri.014G100300 [exp]	45.25	0.6685
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.010G049800 [exp]	54.69	0.6366
AT1G64355			unknown protein		Potri.001G093001 [exp]	57.96	0.6384
AT5G24320			Transducin/WD40 repeat-like su...		Potri.015G009700 [exp]	69.11	0.5517
AT1G15880		ATGOS11, GOS11	golgi snare 11 (.1)		Potri.003G180800 [exp]	72.72	0.6307	GOS11.2

Compare expression of checked genes

Potri.006G253500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.