Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15730 1144 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 1127 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 1063 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT4G00240 705 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT2G42010 704 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G11840 685 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11850 679 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11830 679 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT4G35790 639 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT1G55180 560 / 0 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G032800 [exp] 1160 / 0 AT3G15730 1419 / 0.0 phospholipase D alpha 1 (.1) Potri.001G193000 [exp] 1149 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1) Potri.018G131200 [exp] 1087 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G112100 [exp] 696 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.014G074700 [exp] 689 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.003G015000 [exp] 684 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 678 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 678 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G152100 [exp] 669 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041787 [exp] 1219 / 0 AT1G52570 1087 / 0.0 phospholipase D alpha 2 (.1) Lus10018575 [exp] 1133 / 0 AT3G15730 1388 / 0.0 phospholipase D alpha 1 (.1) Lus10033706 [exp] 1130 / 0 AT3G15730 1382 / 0.0 phospholipase D alpha 1 (.1) Lus10031634 [exp] 1130 / 0 AT3G15730 1380 / 0.0 phospholipase D alpha 1 (.1) Lus10039806 [exp] 1129 / 0 AT3G15730 1389 / 0.0 phospholipase D alpha 1 (.1) Lus10006819 [exp] 679 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 679 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 677 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 676 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10012699 [exp] 676 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal
Representative CDS sequence Show only first row Show all	>Potri.006G253900.1 pacid=42769622 polypeptide=Potri.006G253900.1.p locus=Potri.006G253900 ID=Potri.006G253900.1.v4.1 annot-version=v4.1 ATGACGCCACGATTGCTTCATGGGACACTTGATGTAACAGTATATGGGGTTGATAATCTGCAATATGGATGTGGATTCAGTTTGTTGAAGACGGAGGGAT TTCTGAAGTTTGGGAAGCGATGTCTAGTCAATGTAAAAAGATCAATGTCTTGCCTATCGGAGAATGTTGTTGGTTCTAGACTCTATGCAACAGTAGATTT GGACAAGGCAAGAGTTGCAAGGACCAGAATGGTAGGAAATGAGCCTCATAATCCCCGGTGGAATGAGTCCTTCCACGTATACTGTGCCCATTCAATCTCA CATGTTGTATTCACAATCAAAGATGACGACGCTATTGGGGCAACATTGATTGGAAGAGCTTATCTTCCAGTTGAGGATATCACTAACGGGAACATACTCG AACGATGGGTTGAAGTAGAGGATGAAGATCGTAAACCTATACCAGGAGGTTCTAGAGTCCACATCAAGCTGCAATTCTTTGATGTTAACCAAGACAGGCA TTGGTCTCAGGGAATCAAAAGTCCGCAATACGAGGGTGTTCCCTACGTGTTCTTCAATCAACGACAAGGTTGCCGGGTTACTTTATATCAAGATGCTCAT GTTCCAGACAGTTTTTCCCCAAAGATTTCTTTGGCAGGAAAGCTTTATGAAGCTCACAGATGCTGGGAGGACATCTTTGATGCCATAAGCGATGCAAAAC ACCTAATTTACATAACTGGATGGTCTGTGTATACTGAAATTACCTTGATAAGGGATCCCAATAGACGAAAACCGGGAGGTGAACTTAAACTCGGGGAGCT GCTTAAAAAAAAGGCTGAAGAAGGTGTGACAGTTCTTATGCTTGTTTGGGATGACCGAACTTCTGTTTTGGATTTTAAGAAGGATGGACTCATGGCAACC CACGATGAAGAAACTGAAAAGTACTTCAGGGGCTCCAAGGTGCATTGCATTTTGTGCCCTCGCAATCCCGATGTTGGCAGAAGCGTGATTCAGGGCTTTC AAGTCTCCACCATGTTTACTCACCACCAAAAGACAGTAGTTGTTGATTCCGAAATGCTTGATACTGTATCTGGAAAGAGGGGGATTGTGAGTTTCATTGG AGGCATTGATCTTTGTGATGGGAGGTATGATACACAAGACCATCCCTTATTCAAGACTCTGGACTCAGTCCATTATGATGATTTCCACCAGCCTAACTTT ACAGGCTCCTCAATCAAGAAAGGTGGTCCAAGAGAACCTTGGCATGATATTCATTGCAAATTAGAGGGACCTGTGGCATGGGATGTCCTTTACAATTTTG AGCAAAGGTGGACGAAGCAAGTTGGGGATAAACTTCTAATCTCACAAAAACAGCTTGAAGCAACTACAGTTCGCCCATTGCCAGTGTTGCAGCCAAATGA CACTGAAACATGGAATGTTCAGCTATTCCGTTCTATTGATGATGGAGCTGTTGTTGGCTTTCCACAGAAACCTGACAAAGCAGCTGCAGCAGGCCTTGTT AGTGGGAAGAACAGCGTCATTGACCGAAGCATTCAAGATGCTTATATCAATGCCATTAGGAGGGCCAAGAATTTTATTTACATCGAAAATCAGTATTTCC TTGGAAGCTCATTTGGCTGGAAGTCAACAGATATCAATGTCCCGGATATCGCCGCCTTGCATCTTATACCAAAGGAGCTATCACTTAAGATAGTCAGCAA GATTGAGGCAGGAGAAAGGTTTACTGTCTATATTGTGATCCCAATGTGGCCAGAAGGTCTACCTGAGAGTGGCTCTGTCCAAGCAATATTAGATTGGCAG AGAAGAACAATGGACATGATGTATTCTGATATCACTGAAGCACTCGTGAAAAAGGGGCTCAACACAGATCCTAGGGAGTATTTGGCATTTTTCTGCCTTG GAAACCGAGAGACTAAGAAAATTGGAGAATATGCACCTCCAGAGGAACCAGAGCCTGATACTGATTATAGTAGAGCTCGGCAGGCCCGTCGCTTCATGAT CTACGTTCATGCAAAGATGATGATCGTTGATGATGAGTATATAATCATTGGATCGGCAAACATCAACCAGAGATCAATGGATGGGTCTCGAGATTCTGAG ATTGCAATGGGAGGATACCAACCACATCATTTGGCAACTAGCCAGCCAGCAAGGGGTCAGATATACGGTTTTCGAATGGCATTATGGTATGAGCACCTTG GAATGCTTGACCCTTCCTTCCAACACCCTGAAAGTGTTCAATGTATCCAGCTAGTGAATCAAGTTGCCAATGAAAACTGGGAGAAATACGCCAGCGAAAC TCTCGAACAGGATCTGATGTCTCACCTGCTCAGGTATCCCATTCAAGTTGGTAACAATGGAATTGTTACAACTTTACCAGGGGTTAATCATTTCCCTGAC ACCAAGGCTAATGTCCTGGGCACCAAATCTGACTACTTCCCTCCAATCCTCACCACCTAG
AA sequence Show only first row Show all	>Potri.006G253900.1 pacid=42769622 polypeptide=Potri.006G253900.1.p locus=Potri.006G253900 ID=Potri.006G253900.1.v4.1 annot-version=v4.1 MTPRLLHGTLDVTVYGVDNLQYGCGFSLLKTEGFLKFGKRCLVNVKRSMSCLSENVVGSRLYATVDLDKARVARTRMVGNEPHNPRWNESFHVYCAHSIS HVVFTIKDDDAIGATLIGRAYLPVEDITNGNILERWVEVEDEDRKPIPGGSRVHIKLQFFDVNQDRHWSQGIKSPQYEGVPYVFFNQRQGCRVTLYQDAH VPDSFSPKISLAGKLYEAHRCWEDIFDAISDAKHLIYITGWSVYTEITLIRDPNRRKPGGELKLGELLKKKAEEGVTVLMLVWDDRTSVLDFKKDGLMAT HDEETEKYFRGSKVHCILCPRNPDVGRSVIQGFQVSTMFTHHQKTVVVDSEMLDTVSGKRGIVSFIGGIDLCDGRYDTQDHPLFKTLDSVHYDDFHQPNF TGSSIKKGGPREPWHDIHCKLEGPVAWDVLYNFEQRWTKQVGDKLLISQKQLEATTVRPLPVLQPNDTETWNVQLFRSIDDGAVVGFPQKPDKAAAAGLV SGKNSVIDRSIQDAYINAIRRAKNFIYIENQYFLGSSFGWKSTDINVPDIAALHLIPKELSLKIVSKIEAGERFTVYIVIPMWPEGLPESGSVQAILDWQ RRTMDMMYSDITEALVKKGLNTDPREYLAFFCLGNRETKKIGEYAPPEEPEPDTDYSRARQARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGSRDSE IAMGGYQPHHLATSQPARGQIYGFRMALWYEHLGMLDPSFQHPESVQCIQLVNQVANENWEKYASETLEQDLMSHLLRYPIQVGNNGIVTTLPGVNHFPD TKANVLGTKSDYFPPILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.006G253900 [exp]	0	1
AT1G75260			oxidoreductases, acting on NAD...		Potri.002G034700 [exp]	1.00	0.9686
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245500 [exp]	2.82	0.9583
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.002G017000 [exp]	2.82	0.9613
AT1G30080			Glycosyl hydrolase superfamily...		Potri.004G132700 [exp]	3.46	0.9475
AT5G06850			C2 calcium/lipid-binding plant...		Potri.009G065600 [exp]	3.87	0.9351
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Potri.010G245600 [exp]	4.24	0.9585
AT5G24318			O-Glycosyl hydrolases family 1...		Potri.015G010100 [exp]	4.69	0.9395
AT1G73850			Protein of unknown function (D...		Potri.012G056400 [exp]	5.29	0.9441
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.017G139500 [exp]	5.47	0.9523
AT5G11620			SWIM zinc finger family protei...		Potri.006G238000 [exp]	6.92	0.9440

Compare expression of checked genes

Potri.006G253900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.