Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EBF1.2,EBF3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25490 795 / 0 FBL6, EBF1 EIN3-binding F box protein 1 (.1) AT5G25350 722 / 0 EBF2 EIN3-binding F box protein 2 (.1) AT4G15475 174 / 1e-46 F-box/RNI-like superfamily protein (.1) AT5G27920 122 / 9e-29 F-box family protein (.1) AT5G23340 114 / 4e-27 RNI-like superfamily protein (.1) AT5G01720 100 / 1e-21 RNI-like superfamily protein (.1) AT1G21410 91 / 1e-19 SKP2A F-box/RNI-like superfamily protein (.1) AT1G77000 89 / 7e-19 ATSKP2;2, SKP2B ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2, RNI-like superfamily protein (.1.2) AT1G47056 91 / 8e-19 VFB1 VIER F-box proteine 1 (.1) AT3G58530 83 / 8e-17 RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027700 [exp] 1157 / 0 AT2G25490 820 / 0.0 EIN3-binding F box protein 1 (.1) Potri.018G130800 [exp] 829 / 0 AT2G25490 688 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G068500 [exp] 820 / 0 AT2G25490 679 / 0.0 EIN3-binding F box protein 1 (.1) Potri.006G105400 [exp] 142 / 3e-35 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.016G128400 [exp] 140 / 1e-34 AT5G01720 712 / 0.0 RNI-like superfamily protein (.1) Potri.019G123400 [exp] 131 / 1e-31 AT5G01720 604 / 0.0 RNI-like superfamily protein (.1) Potri.013G013100 [exp] 126 / 3e-30 AT5G27920 631 / 0.0 F-box family protein (.1) Potri.005G022600 [exp] 115 / 1e-26 AT5G27920 626 / 0.0 F-box family protein (.1) Potri.005G088800 [exp] 92 / 9e-20 AT5G23340 567 / 0.0 RNI-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002014 [exp] 869 / 0 AT2G25490 766 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002913 [exp] 857 / 0 AT2G25490 760 / 0.0 EIN3-binding F box protein 1 (.1) Lus10002165 [exp] 755 / 0 AT2G25490 684 / 0.0 EIN3-binding F box protein 1 (.1) Lus10030102 [exp] 734 / 0 AT2G25490 683 / 0.0 EIN3-binding F box protein 1 (.1) Lus10012764 [exp] 169 / 9e-44 AT4G15475 813 / 0.0 F-box/RNI-like superfamily protein (.1) Lus10001264 [exp] 135 / 3e-33 AT5G01720 781 / 0.0 RNI-like superfamily protein (.1) Lus10012214 [exp] 130 / 4e-31 AT5G01720 731 / 0.0 RNI-like superfamily protein (.1) Lus10034013 [exp] 127 / 4e-30 AT2G20790 808 / 0.0 clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10040998 [exp] 108 / 5e-25 AT5G23340 595 / 0.0 RNI-like superfamily protein (.1) Lus10013444 [exp] 106 / 2e-24 AT5G23340 591 / 0.0 RNI-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0022 [poplar] [flax] LRR PF13516 [poplar] [flax] LRR_6 Leucine Rich repeat
Representative CDS sequence Show only first row Show all	>Potri.006G254100.1 pacid=42770123 polypeptide=Potri.006G254100.1.p locus=Potri.006G254100 ID=Potri.006G254100.1.v4.1 annot-version=v4.1 ATGTCTAAGGTCTTTGGATTTGCTGGTGAAAATGATTTTTGCCCTGGGGGGCCAATTTACACAAACCATAAGGAGCAGAACCTCTTTTTGTCTATCGGCC GTCCTGTGGACGTGTACTTTCCTTCACGCAAGAGGTCTCGCATCAGTGCTCCATTTGTCTTCACTGAAGAGAGATTCGAGCAGAAAAAGCAAGCTTCTAT TGAATTTTTGCCAGATGAATGCCTCTTTGAAATCTTCAGACGTTTGCCTGGAGGCGATGAGAGAGGTGCCTGTGCATGTGTTTCAAAGCGTTGGCTTAGT CTTCTAAGCAATATCTGCAAGGATGAGCTTTGCAGCCAGAACGAATCAGCTAAAAAGAACACTCAAGTGAAAAGTGAGGTTGAAGATGAGGAAATCGAGG GTGATGGATATCTGTCCAGGAGCCTGGAGGGGAAAAAGGCCACAGATATTAGACTTGCAGCCATTGCTGTTGGAACTGCTAGTCGGGGAGGATTGGGCAA GCTTTTTATCCGTGGAAGCAATTCCAGTCAAGGAGTGACAAAGGTAGGCCTGAGAGCAATTGCTCGTGGATGCCCATCTCTGAAGGTTCTTTCCCTGTGG AATTTGCCGTCTGTTGGGGATGAAGGTCTATCAGAGATTGCAAATGGCTGTCACAAGCTGGAGAAGCTAGATCTTTCCCAATGCCCTGCAATTACTGACA AGGGTTTGCTTGCAATCGCAAAGAGCTGCCCCAATCTGACTGATCTAGTGATAGAATCTTGCACAAACATTGGTAATGAAGGTCTGCAAGCTGTTGGCCA ACATTGCACCAATCTGAAGTCCATTTCAATTAAAAACTGCCCAGCTATTGGGGATCAAGGAATTGCAGCCCTAGTATCTTCCGCCACAAATGTTTTGACA AAGGTGAAGCTCCAAGCTTTGAACATCACTGATGTGTCCCTGGCTGTTGTTGGACACTATGGCAAGGCAGTAACTGATCTTTTTCTGACAAGCCTCTCAA ATGTCAGCGAGAGGGGTTTTTGGGTCATGGGTAATGGCCAAGGGTTGCAGAAGTTGAAGTCCATGACAGTTGCATCCTGTGTGGGATTGACAGATACTGG ACTTGAAGCTGTGGGAAAGGGTTGCCCAAATTTGAAACAGTTCAACCTCCACAAGTGTTCCTTCTTATCTGACAATGGACTCGTCTCATTTGCAAAATCT GCAGTGTCACTCGAGAGCCTGCTTTTAGAGGAGTGCCACAGGATCACCCAATTTGGGTTTTTTGGTTCCCTTTTAAACTGTGGTGCAAATCTGAAGGCTG CTTCTCTCGTGAACTGCTTTGGGATTAAGGACTTAAAGCTAGACTTGCCTGAGCTGTCTCCTTGCAAATCCCTGCGATCATTGTCCATCCGCAACTGCCC TGGTTTTGGTGATGGTAGTCTTGCTTTGTTGGGTAAGTTGTGCCCGCAACTGCAGAATGTGGAATTGAGTGGGCTTCAGGGAGTAACTGATGCTGGGTTT CTCCCAGTGCTTGAGAACTGTGAGGCTGGCCTGGTGAAGGTTAACCTCAGTGGTTGTGTCAATTTGTCCGACAAAGTGGTGTCAGTGATGACTGAGCAGC ATGGTTGGACTCTTGAAGTGCTAAATCTTGATGGATGCAGGAGGATAACCGATGCAAGTTTGGTGGCAATAGCAGAAAACTGTTTCTTGCTATCTGACCT TGATGTCTCAAAGTGTGCAACCACTGATTCTGGTATTGCAGCCATGGCTCGCTCAAACCAGCTCAATCTGCAGGTCCTCTCTATGTCAGGTTGCTCTATG ATATCAGATAAGAGCTTACTTGCCCTCATAAAACTGGGCCGGACCCTCTTGGGGTTGAATCTCCAGCACTGCAATGCTATTAGCAGCAGCACTGTTGATG TGCTTGTGGAGAGGTTATGGAGGTGCGATATTCTTTCCTAA
AA sequence Show only first row Show all	>Potri.006G254100.1 pacid=42770123 polypeptide=Potri.006G254100.1.p locus=Potri.006G254100 ID=Potri.006G254100.1.v4.1 annot-version=v4.1 MSKVFGFAGENDFCPGGPIYTNHKEQNLFLSIGRPVDVYFPSRKRSRISAPFVFTEERFEQKKQASIEFLPDECLFEIFRRLPGGDERGACACVSKRWLS LLSNICKDELCSQNESAKKNTQVKSEVEDEEIEGDGYLSRSLEGKKATDIRLAAIAVGTASRGGLGKLFIRGSNSSQGVTKVGLRAIARGCPSLKVLSLW NLPSVGDEGLSEIANGCHKLEKLDLSQCPAITDKGLLAIAKSCPNLTDLVIESCTNIGNEGLQAVGQHCTNLKSISIKNCPAIGDQGIAALVSSATNVLT KVKLQALNITDVSLAVVGHYGKAVTDLFLTSLSNVSERGFWVMGNGQGLQKLKSMTVASCVGLTDTGLEAVGKGCPNLKQFNLHKCSFLSDNGLVSFAKS AVSLESLLLEECHRITQFGFFGSLLNCGANLKAASLVNCFGIKDLKLDLPELSPCKSLRSLSIRNCPGFGDGSLALLGKLCPQLQNVELSGLQGVTDAGF LPVLENCEAGLVKVNLSGCVNLSDKVVSVMTEQHGWTLEVLNLDGCRRITDASLVAIAENCFLLSDLDVSKCATTDSGIAAMARSNQLNLQVLSMSGCSM ISDKSLLALIKLGRTLLGLNLQHCNAISSSTVDVLVERLWRCDILS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.006G254100 [exp]	0	1	EBF1.2,EBF3
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G027700 [exp]	1.73	0.7989
AT2G17020			F-box/RNI-like superfamily pro...		Potri.009G139500 [exp]	10.19	0.6605
AT5G24870			RING/U-box superfamily protein...		Potri.018G005600 [exp]	11.74	0.6939
AT3G53670			unknown protein		Potri.006G082100 [exp]	17.40	0.6663
AT2G25490		FBL6, EBF1	EIN3-binding F box protein 1 (...		Potri.018G130800 [exp]	26.83	0.6001
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	27.03	0.6134
AT1G58025			DNA-binding bromodomain-contai...		Potri.004G223700 [exp]	33.40	0.6280
AT1G54710		ATATG18H	homolog of yeast autophagy 18 ...		Potri.005G040300 [exp]	35.98	0.6484
AT1G52080		AR791	actin binding protein family (...		Potri.001G191300 [exp]	37.34	0.6551
AT5G10860		CBSX3	CBS domain containing protein ...		Potri.013G161500 [exp]	38.72	0.5937

Compare expression of checked genes

Potri.006G254100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.