Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32330 289 / 1e-93 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT2G25480 251 / 3e-79 TPX2 (targeting protein for Xklp2) protein family (.1) AT2G35880 159 / 5e-44 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G23090 117 / 2e-29 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT5G28646 102 / 3e-25 WVD2 WAVE-DAMPENED 2, TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT1G54460 99 / 6e-23 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G70950 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G04630 98 / 1e-22 WDL1 WVD2-like 1 (.1.2.3) AT3G01710 42 / 0.0006 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT3G01015 42 / 0.0006 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027500 [exp] 622 / 0 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.006G200400 [exp] 163 / 5e-45 AT2G35880 168 / 1e-46 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.016G066600 [exp] 161 / 3e-44 AT2G35880 149 / 5e-40 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G162800 [exp] 139 / 6e-37 AT3G23090 214 / 1e-66 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.010G076200 [exp] 139 / 1e-36 AT3G23090 185 / 5e-55 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Potri.005G055900 [exp] 118 / 2e-29 AT1G54460 207 / 4e-64 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.013G042800 [exp] 114 / 6e-28 AT1G54460 176 / 5e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G129300 [exp] 106 / 2e-24 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G113000 [exp] 100 / 2e-22 AT1G70950 147 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002915 [exp] 281 / 6e-91 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10029355 [exp] 159 / 2e-43 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10016193 [exp] 157 / 6e-43 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10002012 [exp] 135 / 1e-35 AT4G32330 141 / 5e-38 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10021223 [exp] 130 / 1e-33 AT3G23090 230 / 4e-73 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10022213 [exp] 129 / 6e-33 AT3G23090 220 / 2e-68 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10005533 [exp] 110 / 3e-27 AT1G54460 187 / 3e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10006563 [exp] 110 / 3e-27 AT1G54460 187 / 2e-57 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10042543 [exp] 108 / 2e-26 AT1G54460 176 / 1e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10022003 [exp] 107 / 8e-26 AT1G54460 172 / 3e-51 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.006G254400.4 pacid=42767516 polypeptide=Potri.006G254400.4.p locus=Potri.006G254400 ID=Potri.006G254400.4.v4.1 annot-version=v4.1 ATGGATTCTGATAATCATCTTTTGCCTGATGGTGGGCTTGAGGCTGCCCATCAAAATGGTGGTCATCAGCAAAGTCCTGCTGCTGGAGAGGATGGTGTTG TTTCAAATAATTTAAATGGGAGTGTGGGGAACACTTTTAAGCTTGATGATGGCACTACTGATAATTTATCTACCGGGGAAGTAGAGGATGAATTAAAGGC ATACGTGGGAAGCAATGGACTGCCTGTTTTTAAGGAAGGAGAAGTAAAAGTGAAAGATGCTGATAATTCAGAAAATGCTAAATCTCAGAAAGGTCCGGGA AAGAGGGGTACTGCAAAGCCCTCGCACCTGAAAAATGCCTCAGCCACTCAGGTGAAGAAAGGTAAGGATGGAAGAGATGCTGAGGTGCAACTCACTGTTT CAAATGGTTCTGTTGCTGTAAATTCACAATTAAAACAGCATTTGAAAAGTAAATCATTCAACGAGAGGCAGGGTCAGGCATCCAAGCAATCTGGGACGTC TGATGCAGGACCACCTGAAGGCATTGTGGAGAAGACGAAACTGAAACCTTTGAAAAAAGGGCCTGTTGATAAAGCTGAAGCAGATACAGACTCTACTTCA AGTCCCACTGTGGAAGATGCCAAACCTCGCAAGGTGGGTGCACTTCCAAATTATGGTTTCAGCTTTAAGTGTGATGAACGAGCTGAGAAAAGGAAGGAGT TCTATTCAAAGCTCGAGGAAAAGATTCATGCTAAGGAAGTGGAAAAGACTACTCTGCAAGCTAAGTCCAAGGAAACTCACGAAGCTGAGATTAAGATGCT TAGGAAGAGTTTGGGTTTTAAAGCAACACCTATGCCCAGCTTTTATCAGGAGCCTGCACCACCTAAGGTGGAGCTAAAGAAGATACCCACAACAAGAGCC AAATCTCCCAAGCTAGGTAGAAGGAAGAGCTCATCCCCTGCAGATACTGAAGGAAACAATAGCCAGAGCTATCGACCAGGTCGGCTAAGTTTGGATGAGA AAGTATCTTCAAACATTCCCATCAAAGGACTTTCCCCCGCCCATCCAAAGAAGCCACAGAGGAAGTCCCTTCCCAAACTGCCTTCTGAAAAGACCAAGTT ATCCAGTGACGAAAAAACTAAATTGCCTAAAGCATCAAATGAGGAAAATCCCACCTTATCTAATCAATCAAATGAAGGTTCATCTCCCACCCAAGAGCAG GAAGCTGTTTCAAAGAATGAGAGTGAATTTCTCCCCGGAAAAGATGAGACAGCGGTTAAAGAGGAAGCTCAGGCCACGTTGGCGAAAGATCCAGTAGCAT TGGTGGTTTGA
AA sequence Show only first row Show all	>Potri.006G254400.4 pacid=42767516 polypeptide=Potri.006G254400.4.p locus=Potri.006G254400 ID=Potri.006G254400.4.v4.1 annot-version=v4.1 MDSDNHLLPDGGLEAAHQNGGHQQSPAAGEDGVVSNNLNGSVGNTFKLDDGTTDNLSTGEVEDELKAYVGSNGLPVFKEGEVKVKDADNSENAKSQKGPG KRGTAKPSHLKNASATQVKKGKDGRDAEVQLTVSNGSVAVNSQLKQHLKSKSFNERQGQASKQSGTSDAGPPEGIVEKTKLKPLKKGPVDKAEADTDSTS SPTVEDAKPRKVGALPNYGFSFKCDERAEKRKEFYSKLEEKIHAKEVEKTTLQAKSKETHEAEIKMLRKSLGFKATPMPSFYQEPAPPKVELKKIPTTRA KSPKLGRRKSSSPADTEGNNSQSYRPGRLSLDEKVSSNIPIKGLSPAHPKKPQRKSLPKLPSEKTKLSSDEKTKLPKASNEENPTLSNQSNEGSSPTQEQ EAVSKNESEFLPGKDETAVKEEAQATLAKDPVALVV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32330			TPX2 (targeting protein for Xk...		Potri.006G254400 [exp]	0	1
AT2G46550			unknown protein		Potri.005G071400 [exp]	1.73	0.9308
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.003G188500 [exp]	2.44	0.9094	Pt-4CL.4
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.010G036200 [exp]	3.46	0.9002
					Potri.016G052100 [exp]	6.48	0.8832
AT4G27745			Yippee family putative zinc-bi...		Potri.015G009200 [exp]	7.74	0.8964
AT3G05327			Cyclin family protein (.1)		Potri.005G033600 [exp]	7.87	0.9129
AT5G50260		CEP1	cysteine endopeptidase 1, Cyst...		Potri.015G087400 [exp]	11.31	0.8795	Pt-CYSP2.1
AT2G20740			Tetraspanin family protein (.1...		Potri.019G101800 [exp]	11.83	0.8673
AT5G27020			unknown protein		Potri.013G011950 [exp]	12.12	0.8484
AT4G35550	HD	HB-4, WOX13, AT...	WUSCHEL related homeobox 13 (....		Potri.002G008800 [exp]	13.03	0.8601	HB1.3

Compare expression of checked genes

Potri.006G254400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.