Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32320 392 / 5e-137 APX6 ascorbate peroxidase 6 (.1) AT3G09640 150 / 1e-43 APX1B, APX2 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) AT1G07890 134 / 4e-37 ATAPX01, CS1, APX1, MEE6, ATAPX1 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) AT4G35970 130 / 2e-35 APX5 ascorbate peroxidase 5 (.1) AT4G35000 129 / 6e-35 APX3 ascorbate peroxidase 3 (.1) AT1G77490 129 / 4e-34 TAPX thylakoidal ascorbate peroxidase (.1) AT4G08390 125 / 1e-32 SAPX stromal ascorbate peroxidase (.1.2.3.4) AT4G16270 92 / 9e-21 Peroxidase superfamily protein (.1) AT1G14540 91 / 1e-20 Peroxidase superfamily protein (.1) AT1G14550 91 / 1e-20 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G015400 [exp] 139 / 3e-39 AT1G07890 370 / 4e-131 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Potri.006G132200 [exp] 139 / 5e-39 AT3G09640 442 / 2e-159 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.016G084800 [exp] 137 / 1e-38 AT3G09640 410 / 8e-147 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Potri.004G174500 [exp] 132 / 2e-36 AT4G35000 423 / 6e-151 ascorbate peroxidase 3 (.1) Potri.009G134100 [exp] 130 / 2e-35 AT4G35000 454 / 8e-163 ascorbate peroxidase 3 (.1) Potri.005G112200 [exp] 129 / 3e-35 AT4G35000 438 / 1e-156 ascorbate peroxidase 3 (.1) Potri.005G179200 [exp] 129 / 4e-34 AT1G77490 556 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.002G081900 [exp] 129 / 6e-34 AT1G77490 514 / 0.0 thylakoidal ascorbate peroxidase (.1) Potri.016G132800 [exp] 95 / 6e-22 AT5G05340 336 / 3e-115 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002916 [exp] 370 / 1e-128 AT4G32320 330 / 4e-113 ascorbate peroxidase 6 (.1) Lus10019906 [exp] 146 / 6e-42 AT3G09640 424 / 2e-152 ASCORBATE PEROXIDASE 1B, ascorbate peroxidase 2 (.1.2) Lus10014128 [exp] 128 / 1e-34 AT4G35000 441 / 1e-157 ascorbate peroxidase 3 (.1) Lus10019781 [exp] 128 / 4e-34 AT4G35000 433 / 8e-154 ascorbate peroxidase 3 (.1) Lus10025680 [exp] 130 / 5e-34 AT1G77490 584 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10013537 [exp] 125 / 1e-33 AT1G07890 445 / 1e-160 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10015970 [exp] 125 / 2e-33 AT1G07890 436 / 3e-156 maternal effect embryo arrest 6, ascorbate peroxidase 1 (.1.2.3.4.5.6.7.8) Lus10000180 [exp] 122 / 4e-32 AT4G35000 372 / 3e-130 ascorbate peroxidase 3 (.1) Lus10018155 [exp] 123 / 2e-31 AT1G77490 560 / 0.0 thylakoidal ascorbate peroxidase (.1) Lus10028432 [exp] 110 / 4e-28 AT4G35000 337 / 6e-117 ascorbate peroxidase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.006G254500.1 pacid=42767359 polypeptide=Potri.006G254500.1.p locus=Potri.006G254500 ID=Potri.006G254500.1.v4.1 annot-version=v4.1 ATGGCTTCTTTAACTATCCTCGGCACCACCAAACCCTCCTCTCTTCTCTCCTCTACTCTCTCCTCCACTTCTCCTCAAGAATTCAAATTTCCCGCCAAAT CACAACGACCCTTTTCCTCAACTGTCAAATTTCGGGCCAAGCCCTTCAAAGCCTGCGCTTTTCCCTCCAACAACAATGATAACGGAGAAAAAGATGATTG CTTTTCAACTAGAAGGAGTTTACTTGTCTGTATATCAACATTGCCTTTTCTATTTGGTTTGCATGAATTTCTGGAGGATCTTAGCGCTAAAGCATTGCAG TCGGATACAAACACATATATGCTCATAAAGGAAGAAGTGAGGAAGGTAGTATCCAAAGGCAAGGCTGCTGGTGTACTTCGTCTTGTTTTTCATGATGCAG GAACCTTTGAAATGGATGGGAATTCAGGCGGGATGAATGGATCAATAGTTTATGAACTTGAAAGGCCTGAAAATGCTGGTTTAAAGAAATCACTGAAGAT TCTTGACAAAGCAAAGGGTGAAGTGGATGCAATACAACAAGTATCCTGGGCAGACATGATAGCTGTGGCGGGAGCAGAAGCAGTTTCAGTTTGTGGAGGT CCAACAATACCTGTTCAGTTAGGCAGACTAGATTCACTGGAGCCCGATGCTGAAGGCAAACTTCCTCGAGAATCTTTGGATGCACCTGGTTTGAAGCAGA ACTTTAAAAGAAAAGGCTTATCAACACAGGAACTTGTCGCGTTATCTGGAGCGCATACTCTTGGAAGTAAAGGATTTGGAAGTCCATTTGTTTTTGACAA TTCTTACTATAAAATTCTTCTAGAAAAGCCATGGAAATCTTCAGGTGGTATGTCAAGCATGATTGGTCTTCCTTCAGATCATGCTCTTGTTGAGGATGAT GAATGTTTAAGATGGATCAAAAAGTATGCTGACAATCAGAACATGTTCTTCGATGATTTTAAGAACGCATACATCAAACTTGTGAATTCTGGTGCAAGAT GGAAAAGCTTGTAA
AA sequence Show only first row Show all	>Potri.006G254500.1 pacid=42767359 polypeptide=Potri.006G254500.1.p locus=Potri.006G254500 ID=Potri.006G254500.1.v4.1 annot-version=v4.1 MASLTILGTTKPSSLLSSTLSSTSPQEFKFPAKSQRPFSSTVKFRAKPFKACAFPSNNNDNGEKDDCFSTRRSLLVCISTLPFLFGLHEFLEDLSAKALQ SDTNTYMLIKEEVRKVVSKGKAAGVLRLVFHDAGTFEMDGNSGGMNGSIVYELERPENAGLKKSLKILDKAKGEVDAIQQVSWADMIAVAGAEAVSVCGG PTIPVQLGRLDSLEPDAEGKLPRESLDAPGLKQNFKRKGLSTQELVALSGAHTLGSKGFGSPFVFDNSYYKILLEKPWKSSGGMSSMIGLPSDHALVEDD ECLRWIKKYADNQNMFFDDFKNAYIKLVNSGARWKSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	0	1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	1.41	0.9826
AT1G71720		PDE338	PIGMENT DEFECTIVE 338, Nucleic...		Potri.002G063400 [exp]	2.00	0.9822
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	2.64	0.9750
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	4.89	0.9743	CYP97C4
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	5.29	0.9756	Pt-FFC.2
AT5G03880			Thioredoxin family protein (.1...		Potri.006G213000 [exp]	5.47	0.9762
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	6.92	0.9714
AT5G52440		HCF106	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.015G147100 [exp]	7.07	0.9756	Pt-HCF106.1
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.014G066500 [exp]	7.74	0.9725
AT5G55220			trigger factor type chaperone ...		Potri.015G065900 [exp]	10.24	0.9688

Compare expression of checked genes

Potri.006G254500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.